View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15915_high_5 (Length: 349)
Name: NF15915_high_5
Description: NF15915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15915_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 4214459 - 4214142
Alignment:
| Q |
16 |
acacaaaaaacagaagtggaggagaaatctatgaaaggctggtcaagaatcaaacttacaatgatggctagaatccggacaaaaactgcaaccaaatcag |
115 |
Q |
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| T |
4214459 |
acacaaaaaacagaagtggaggagaaatctatgaaaggctggtcaagaatcaaacttacaatgatggctagaatccggacaaaaactgcaaccaaatcag |
4214360 |
T |
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| Q |
116 |
taaacaaggtcagagcatgcttcacataatcgagatcgccaaagtgtgccttctcaactatttcttgcgtgtctactacaatgtaacccacaaacaccaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4214359 |
taaacaaggtcagagcatgcttcacataatcgagatcgccaaagtgtgccttctcaactatttcctgcgtgtctactacaatgtaacccacaaacaccaa |
4214260 |
T |
|
| Q |
216 |
aagcccaaaatacaactgcaaaagtaggatataaacactatgtaaacaaccttatagcattataaaaacaaagcttaaagataattccacaaaagtaaga |
315 |
Q |
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| T |
4214259 |
aagcccaaaatacaactgcaaaagtaggatataaacactatgtaaacaaccttatatcattataaaaacaaagcttaaagataattccacaaaagtaaga |
4214160 |
T |
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| Q |
316 |
actcgggaagttatttac |
333 |
Q |
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| T |
4214159 |
actcaggaagttatttac |
4214142 |
T |
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Back To:
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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 31160965 - 31161029
Alignment:
| Q |
75 |
aatgatggctagaatccggacaaaaactgcaaccaaatcagtaaacaaggtcagagcatgcttca |
139 |
Q |
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| T |
31160965 |
aatgatggctagattccggaaaaaaactgcaaccaaatcactaaacaaggtcagagcatgcttca |
31161029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 41277720 - 41277788
Alignment:
| Q |
169 |
tcaactatttcttgcgtgtctactacaatgtaacccacaaacaccaaaagcccaaaatacaactgcaaa |
237 |
Q |
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|||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41277720 |
tcaattatttcttgggtgtctactacaacataacccacaaacaccaaaagcccaaaatacaactgcaaa |
41277788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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