View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15915_low_2 (Length: 591)
Name: NF15915_low_2
Description: NF15915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15915_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 19 - 579
Target Start/End: Complemental strand, 42840187 - 42839614
Alignment:
| Q |
19 |
cctatgcatgcacatatgcaacatattaacaaatgaaggtttaatatatgcattaagattgaaaatcataagcagtagacacagctatcatgaaatagta |
118 |
Q |
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| T |
42840187 |
cctatgcatgcacatatgcaacatattaacaaatgaaggtttaatatatgcattaagattgaaaatcataagcagtagacacagctatcatgaaatagta |
42840088 |
T |
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| Q |
119 |
gaaatccaaatacagtcattgagaaaaca-----------------atcgagagaaaagttgcagaaagtgcgagaacattgaatctatttttgtacttt |
201 |
Q |
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| T |
42840087 |
gaaatccaaatacagtcattgagaaaacatagtctttgagaaaacaatcgagagaaaagttgcagaaagtgcgagaacattgaatctatttttgtacttt |
42839988 |
T |
|
| Q |
202 |
tatttcaatgatttgaatattgcatttcttacaatcatctcctctttcctagtgtataatattagtttcttgaagcttctgtgttcatagagctgaatat |
301 |
Q |
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| T |
42839987 |
tatttcaatgatttgaatattgcatttcttacaatcatctcctctttcctagtgtataatattagtttcttgaagcttctgtgttcatggagctgaatat |
42839888 |
T |
|
| Q |
302 |
gtgagttgaacattctatggttaagtcagataaataaagatgaatctgaccttacaagctgttatttcattgacattcatcttagtgatagattaagagg |
401 |
Q |
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| T |
42839887 |
gtgagttgaacattctatggttaagtcagataaataaagatgaatctgaccttacaagctgttatttcattgacattcatcttagtgatagattaagagg |
42839788 |
T |
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| Q |
402 |
aggtaagattaggatctacggtctatagtatagatttgtgcatcaaattgcttgcttatatatctggtttctattgtaaaacatacaggaaagcaaacta |
501 |
Q |
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| T |
42839787 |
aggtaagattaggatctacggtctatagtatagatttgtgcatcaaatt----gcttatatatctggtttctattgtaaaacatacaggaaagcaaacta |
42839692 |
T |
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| Q |
502 |
ttttcgttatcaatatctatgtgaaaactaatgcatctcaacttattagttattacaatgtacggtactgatattctt |
579 |
Q |
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| T |
42839691 |
ttttcgttatcaatatctatgtgaaaactaatgcatctcaacttattagttattacaatgtacggtactgatattctt |
42839614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 37406243 - 37406187
Alignment:
| Q |
139 |
gagaaaacaatcgagagaaaagttgcagaaagtgcgagaacattgaatctatttttg |
195 |
Q |
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| T |
37406243 |
gagaaaacaattgagagaaaatatgcagagagcgagagaacattgaatctaattttg |
37406187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 386 - 567
Target Start/End: Complemental strand, 16074658 - 16074486
Alignment:
| Q |
386 |
gtgatagattaagaggaggtaagattaggatctacggtctatagtatagatttgtgcatcaaattgcttgcttatatatctggtttctattgtaaaacat |
485 |
Q |
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| T |
16074658 |
gtgaaagattaagaggaagtaagattaggatctacggtctatag-----atttgtgcatcaaattgctt----atatatctggtttctatagtgaaatat |
16074568 |
T |
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| Q |
486 |
acaggaaagcaaactattttcgttatcaatatctatgtgaaaactaatgcatctcaacttattagttattacaatgtacggt |
567 |
Q |
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| T |
16074567 |
ataggaaaccaaactatttttgttgtctatgtctatgacaaaactaatgcatatgaacttattagttattacaatgtacggt |
16074486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 286 - 325
Target Start/End: Complemental strand, 16074720 - 16074681
Alignment:
| Q |
286 |
tcatagagctgaatatgtgagttgaacattctatggttaa |
325 |
Q |
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| T |
16074720 |
tcatggagctgaatatgtgagttgaacattctatggttaa |
16074681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 356 - 454
Target Start/End: Complemental strand, 32690423 - 32690330
Alignment:
| Q |
356 |
caagctgttatttcattgacattcatcttagtgatagattaagaggaggtaagattaggatctacggtctatagtatagatttgtgcatcaaattgctt |
454 |
Q |
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| T |
32690423 |
caagctattatttcattgacagtcatcttagtgaaagattaagaataagtaagattaggatctacagtc-----tacagatttgtgcatcaaattgctt |
32690330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 286 - 325
Target Start/End: Complemental strand, 32690533 - 32690494
Alignment:
| Q |
286 |
tcatagagctgaatatgtgagttgaacattctatggttaa |
325 |
Q |
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| T |
32690533 |
tcatggagctgaatatgtgagttgaacattctatggttaa |
32690494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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