View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15915_low_3 (Length: 515)
Name: NF15915_low_3
Description: NF15915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15915_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 49423662 - 49423170
Alignment:
| Q |
1 |
accaagctcacagaagcctttctaactgccatgactcgatttacagcatggacaaagattaaacgagtagttgatctcccaaactattcccatcaattga |
100 |
Q |
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| T |
49423662 |
accaagctcacagaagcctttctaactgccatgactcgatttacagcatggacaaagattaaacgagtagttgatctcccaaactatttccatcaattga |
49423563 |
T |
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| Q |
101 |
tttttgcccgctgagtttaaataatggttcatctatcctctgttttacttgttctaccatgcagctgctgggtttggtggattgaactgctaaccttgtc |
200 |
Q |
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| T |
49423562 |
tttttgcccgctgagtttaaataatggttcatctatcctctgttttacttgttctaccatgcagctgctaggtttgatggattgaactgctaaccttgtc |
49423463 |
T |
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| Q |
201 |
tccttgtatatgttaagnnnnnnnnttatccttaaaacttgtcaacctctttattcttccttatgatttcaattacctagatccatgttttttgagggta |
300 |
Q |
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| T |
49423462 |
tccttgtatatgttaagaaaaaaaattatccttaaaacttgtcaacctctttattcttccttatgatttcaattacctagatccatgttttttgagggta |
49423363 |
T |
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| Q |
301 |
aacgttgcatattagtttttctcatctttgtcatgtgctatcttttctttttggcacagaagaatggacaaaattaaacaaatatttgatttctaaaagg |
400 |
Q |
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| T |
49423362 |
aacgttgcatattagtttttctcatctttgtcatgtgctatcttttctttttggcacagaagaatggacaaaattaaacaaatatttgatttctaaaagg |
49423263 |
T |
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| Q |
401 |
aatcgagaaatgtgagtcgtcactgggcagttaagtcataaggaatcggtaattatacgaggtagttccctttcaaaattctagtgctccgcg |
493 |
Q |
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| T |
49423262 |
aatcgagaaatgtgagtcgtcactgggcagttaagtcataaggaatcggtaattatccgaggtagttccctttcaaaattctagtgctccgcg |
49423170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 49432069 - 49431982
Alignment:
| Q |
11 |
cagaagcctttctaactgccatgactcgatttacagcatggacaaagattaaacgagtagttgatctcccaaactattcccatcaattg |
99 |
Q |
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| T |
49432069 |
cagaatcctatctaactgccatgactc-atttaaagcatgtacaaaaaataaacgagtagttgatctcccaaacaattttcatcaattg |
49431982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 404
Target Start/End: Complemental strand, 49425531 - 49425448
Alignment:
| Q |
322 |
tcatctttgtcatgtgctatcttttctttttggcacagaagaatggacaaa-attaaacaaatatttgatttctaaaaggaatc |
404 |
Q |
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| T |
49425531 |
tcatctttgtcatatgttgtcttttctctttaacacagaagcatggacaaagattaaacaaatattttatttctcaaaggaatc |
49425448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 49425711 - 49425674
Alignment:
| Q |
152 |
ttctaccatgcagctgctgggtttggtggattgaactg |
189 |
Q |
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| T |
49425711 |
ttctaacatgcaactgctgggtttggtggattgaactg |
49425674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 49431953 - 49431904
Alignment:
| Q |
226 |
ttatccttaaaacttgtcaacctctttattcttccttatgatttcaatta |
275 |
Q |
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| T |
49431953 |
ttatccttaaaacttgtcaacttctttttgcttgcttatgacttcaatta |
49431904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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