View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15915_low_4 (Length: 418)
Name: NF15915_low_4
Description: NF15915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15915_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 407
Target Start/End: Original strand, 630130 - 630533
Alignment:
| Q |
20 |
cgccgcgccgccgccgtcctacaggttcctgccgtccaacatgtctcaaccattctgaaaaccaccatttt----------------tctcattccctgc |
103 |
Q |
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| T |
630130 |
cgccacgccgccgccgtcctacaggttcatgtcgtccaacatgtctcaaccattctgaaaaccaccatttttctcattcctattttttctcattccctgc |
630229 |
T |
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| Q |
104 |
attttcggatcgcaatggaaaccaccaccgcaataacaaccacaaccaccaaaggtgccggtggaataaaaggcggcaaagggaagaaagccgtttcaaa |
203 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
630230 |
attttcggatcgcaatggaaaccaccgccgcaataacaaccacaaccaccaaaggtgtcggtggaataaaaggcggcaaagggaagaaagccgtttcaaa |
630329 |
T |
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| Q |
204 |
gtcctccaaagtcggtcttcaattccccattggtcgtatcgcgaggttcatgaagaaaggacactattctcaacgtattggcactggtgctccgatctac |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
630330 |
gtcctccaaagtcggtcttcaattccccattggtcgtatcgcgaggttcatgaagaaaggacactattctcagcgtattggcactggtgctccgatctac |
630429 |
T |
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| Q |
304 |
ctcgccgaggttcttgaattggctgggaatgttgcaagagataacaagaagaacagaattaacccccctagacacgtgtgtcttgctgcgaggaacgttg |
403 |
Q |
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| T |
630430 |
ctcgccgaggttcttgaattggctgggaatgttgcaagagataacaagaagaacataattaacccccctagacacgtgtgtcttgctgcgaggaacgttg |
630529 |
T |
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| Q |
404 |
atga |
407 |
Q |
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|||| |
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| T |
630530 |
atga |
630533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 5e-63; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 116 - 310
Target Start/End: Original strand, 46584206 - 46584400
Alignment:
| Q |
116 |
caatggaaaccaccaccgcaataacaaccacaaccaccaaaggtgccggtggaataaaaggcggcaaagggaagaaagccgtttcaaagtcctccaaagt |
215 |
Q |
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| T |
46584206 |
caatggattccaccaccaccacaacaaccacaaccaccaaaggtgccggtggaagaaaaggcggcgaaaggaagaaagccgtttcaaaatcctccaaagc |
46584305 |
T |
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| Q |
216 |
cggtcttcaattccccattggtcgtatcgcgaggttcatgaagaaaggacactattctcaacgtattggcactggtgctccgatctacctcgccg |
310 |
Q |
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| T |
46584306 |
cggtctccaattccccgttggtcgtatcgctaggttcatgaagaaaggtcgctattctcagcgtgttggcaccggtgctccgatctacctcgccg |
46584400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 311 - 407
Target Start/End: Original strand, 46584524 - 46584617
Alignment:
| Q |
311 |
aggttcttgaattggctgggaatgttgcaagagataacaagaagaacagaattaacccccctagacacgtgtgtcttgctgcgaggaacgttgatga |
407 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| |
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| T |
46584524 |
aggttcttgaattggctgggaatgctgcaagagataacaagaagaacagaattaa---ccctagacacgtgtgtcttgctgtgaggaacgatgatga |
46584617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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