View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15915_low_7 (Length: 343)
Name: NF15915_low_7
Description: NF15915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15915_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 45974286 - 45973963
Alignment:
| Q |
1 |
ataagtataatcgcgtagttgcgatgtttaaagcgggatatggttttccgataaagaggaaatgtgatatgctatagtgctaataataatggaggtactg |
100 |
Q |
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| T |
45974286 |
ataagtataatcgcgtagttgcgatgtttaaagcgggatatggttttccgataaagaggaaatgtgatatgctatagtgctaataataatggaggtactg |
45974187 |
T |
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| Q |
101 |
gtaactgaaaaacacagagaaaacgtgaatgtgatggtgatgtaatgtggttggttgtgaacttgtgacattgtgcactgttgatttaacttgtaatggg |
200 |
Q |
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| T |
45974186 |
gtaactgaaaaacacagagaaaacgtgaatgtgatggtgatgtaatgtggttggttgtgaacttgtgacattgtgcactgttgatttaacttgtaatggg |
45974087 |
T |
|
| Q |
201 |
ttggagagttgcaaaatagtcaatgccaatggtggtggtggtgggaaagaaaacacaagagtactttcttatcaactaaaattcggattgtgattcactg |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974086 |
ttggagagttgcaaaatagtcaatgccagtggtggtggtggtgggaaagaaaacacaagagtactttcttatcaactaaaattcggattgtgattcactg |
45973987 |
T |
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| Q |
301 |
cattcaataaaataacacagtcac |
324 |
Q |
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|||||||||||||||||||||||| |
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| T |
45973986 |
cattcaataaaataacacagtcac |
45973963 |
T |
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