View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15915_low_8 (Length: 334)

Name: NF15915_low_8
Description: NF15915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15915_low_8
NF15915_low_8
[»] chr6 (15 HSPs)
chr6 (75-301)||(14046057-14046285)
chr6 (73-241)||(13474167-13474336)
chr6 (141-301)||(14021326-14021486)
chr6 (116-301)||(14109119-14109303)
chr6 (156-301)||(14083375-14083522)
chr6 (13-59)||(14109538-14109584)
chr6 (79-152)||(14021508-14021582)
chr6 (86-183)||(14024255-14024353)
chr6 (23-61)||(14046465-14046503)
chr6 (10-61)||(14014210-14014261)
chr6 (10-51)||(14024351-14024392)
chr6 (186-279)||(13931095-13931190)
chr6 (186-240)||(14013878-14013932)
chr6 (10-55)||(13473942-13473987)
chr6 (10-58)||(13931429-13931477)


Alignment Details
Target: chr6 (Bit Score: 141; Significance: 7e-74; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 75 - 301
Target Start/End: Complemental strand, 14046285 - 14046057
Alignment:
Q  75 atgttcaaaagttatctttcatgatattgtgtttgaagttacaagttttctaaaa-tttatattttggactttaaatctcatgaggtaaacacttaaact 173  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||  |||| ||||||| ||||||||||||    
T  14046285 atgttcaaaagttatctttcatgatattgtgtttcaagttacaagttttctaaaaatttatattttggactttgtatctaatgaggttaacacttaaact 14046186  T
Q  174 attatatagggggcatcttcactaaagggtactcgataatgcattggtggtgaatcagattaaggtgtgaagtcaaagatctactccagggagatgaatg 273  Q
    |||||||||||  ||||||||| ||| |||||||| || ||| ||||||||||||||||| ||||||||||||||||||||||||  ||| |||| ||||    
T  14046185 attatatagggcacatcttcacaaaatggtactcgttagtgcgttggtggtgaatcagataaaggtgtgaagtcaaagatctactataggaagataaatg 14046086  T
Q  274 gtttatcttc-ttttatgaatggtttgtg 301  Q
    |||| ||||| ||||||||||||||||||    
T  14046085 gtttctcttctttttatgaatggtttgtg 14046057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 73 - 241
Target Start/End: Original strand, 13474167 - 13474336
Alignment:
Q  73 atatgttcaaaagttatctttcatgatattgtgtttgaagttacaagttttctaa-aatttatattttggactttaaatctcatgaggtaaacacttaaa 171  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||| |||| ||||  | ||||||||||    
T  13474167 atatgttcaaaagttatctttcatgatattgtgtttcaagttacaagttttctaggaatttatattttggactttatatctaatgaccttaacacttaaa 13474266  T
Q  172 ctattatatagggggcatcttcactaaagggtactcgataatgcattggtggtgaatcagattaaggtgt 241  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||| || | |||||| ||||    
T  13474267 ctattatatagggggcatcttcactaaagggtactccatagtgcattggtggttaaccggattaacgtgt 13474336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 141 - 301
Target Start/End: Complemental strand, 14021486 - 14021326
Alignment:
Q  141 gactttaaatctcatgaggtaaacacttaaactattatatagggggcatcttcactaaagggtactcgataatgcattggtggtgaatcagattaaggtg 240  Q
    ||||||| |||| |||| || |||||||||||||| |||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  14021486 gactttatatctaatgacgttaacacttaaactatcatatagggggtatcttcactaaagggtactcgatagtgcgttggtggtgaatcagattaaggtg 14021387  T
Q  241 tgaagtcaaagatctactccagggagatgaatggtttatcttcttttatgaatggtttgtg 301  Q
    || |||||||||| |||||  || ||||||||||||| |||| |||||| |||||||||||    
T  14021386 tgcagtcaaagatttactcttggaagatgaatggtttctcttattttattaatggtttgtg 14021326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 116 - 301
Target Start/End: Complemental strand, 14109303 - 14109119
Alignment:
Q  116 caagttttctaaaa-tttatattttggactttaaatctcatgaggtaaacacttaaactattatatagggggcatcttcactaaagggtactcgataatg 214  Q
    |||||||||||||| |||||||||| ||||||| || | | ||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||| ||    
T  14109303 caagttttctaaaaatttatattttagactttatatataaagaggttaacacttaaactat-atatagggggcat-ttcactaaagggtactcgatagtg 14109206  T
Q  215 cattggtggtgaatcagattaaggtgtgaagtcaaagatctactccagggagatgaatggtttatcttcttttatgaatggtttgtg 301  Q
    | || ||||||||||| ||||||||||| ||||||||| |||||| ||| ||||||||| ||| | |||||||||||||| ||||||    
T  14109205 cgttcgtggtgaatcaaattaaggtgtgcagtcaaagacctactctaggaagatgaatgctttcttttcttttatgaatgatttgtg 14109119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 156 - 301
Target Start/End: Complemental strand, 14083522 - 14083375
Alignment:
Q  156 gaggtaaacacttaaactattatatagggggcatcttcactaaagggtactcgataatgcattggtggtgaa--tcagattaaggtgtgaagtcaaagat 253  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |  ||||||||||||||  |||||||||     
T  14083522 gaggttaacacttaaactattatatagggggcatcttcgctaaagggtactcgatagtgcattggtggtggatctcagattaaggtgttcagtcaaagac 14083423  T
Q  254 ctactccagggagatgaatggtttatcttcttttatgaatggtttgtg 301  Q
    || ||| ||| ||||| ||||||| | |||||||||||||||||||||    
T  14083422 ctgctctaggaagatgtatggtttcttttcttttatgaatggtttgtg 14083375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 14109584 - 14109538
Alignment:
Q  13 atactgtaactttagacatctcatatatacttacatttaacatcaaa 59  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  14109584 atactttaactttagacatctcatatatacttacatttaacatcaaa 14109538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 14021582 - 14021508
Alignment:
Q  79 tcaaaagttatctttcatgatattgtgtttgaagttacaagttttctaa-aatttatattttggactttaaatct 152  Q
    ||||||||||||||| |||||||| ||||| |||||||||||||||||| ||||| |||||  ||||||| ||||    
T  14021582 tcaaaagttatctttgatgatattatgtttcaagttacaagttttctaataatttgtatttcagactttatatct 14021508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 14024353 - 14024255
Alignment:
Q  86 ttatctttcatgatattgtgtttgaagttacaagttttctaaaa-tttatattttggactttaaatctcatgaggtaaacacttaaactattatatagg 183  Q
    ||||||||||||||||||| ||| ||||| ||| |||| ||||| |||| ||||| ||||||| |||| | | ||| || |||||||||||||||||||    
T  14024353 ttatctttcatgatattgtttttcaagtttcaacttttttaaaattttaaattttagactttatatctaaagtggttaatacttaaactattatatagg 14024255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 14046503 - 14046465
Alignment:
Q  23 tttagacatctcatatatacttacatttaacatcaaata 61  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14046503 tttagacatctcatatatacttacatttaacatcaaata 14046465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 14014261 - 14014210
Alignment:
Q  10 ataatactgtaactttagacatctcatatatacttacatttaacatcaaata 61  Q
    |||||||| |||||||||  ||||||||||||||||||||| ||||||||||    
T  14014261 ataatactttaactttagcaatctcatatatacttacattttacatcaaata 14014210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 14024392 - 14024351
Alignment:
Q  10 ataatactgtaactttagacatctcatatatacttacattta 51  Q
    |||||||| ||||||||||| |||||||||||||||||||||    
T  14024392 ataatactttaactttagacctctcatatatacttacattta 14024351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 279
Target Start/End: Complemental strand, 13931190 - 13931095
Alignment:
Q  186 gcatcttcactaaagggtactcgataatgcattggtggtgaatcagattaagg--tgtgaagtcaaagatctactccagggagatgaatggtttat 279  Q
    ||||||| ||| |||||||||||||| | | ||||||||| ||||||||||||  |||| ||| ||||  |||||| ||  |||||||||||||||    
T  13931190 gcatctttactgaagggtactcgatagttcgttggtggtggatcagattaaggtctgtgcagtaaaagtcctactctagaaagatgaatggtttat 13931095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 14013932 - 14013878
Alignment:
Q  186 gcatcttcactaaagggtactcgataatgcattggtggtgaatcagattaaggtg 240  Q
    ||||||| |||||||  | ||||||| ||||||||||||| ||||||||||||||    
T  14013932 gcatcttgactaaagattgctcgatagtgcattggtggtggatcagattaaggtg 14013878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 13473942 - 13473987
Alignment:
Q  10 ataatactgtaactttagacatctcatatatacttacatttaacat 55  Q
    |||||||| ||||| ||||||| ||||||||| |||||||||||||    
T  13473942 ataatactttaactctagacatttcatatatatttacatttaacat 13473987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 13931477 - 13931429
Alignment:
Q  10 ataatactgtaactttagacatctcatatatacttacatttaacatcaa 58  Q
    |||||||| ||||| |  || ||||||||||||||||||||||||||||    
T  13931477 ataatactttaactgttaacctctcatatatacttacatttaacatcaa 13931429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University