View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15916_high_1 (Length: 929)

Name: NF15916_high_1
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15916_high_1
NF15916_high_1
[»] chr2 (12 HSPs)
chr2 (466-732)||(35887335-35887610)
chr2 (740-829)||(35918850-35918939)
chr2 (251-493)||(35918943-35919197)
chr2 (433-504)||(35542304-35542375)
chr2 (433-504)||(35559642-35559713)
chr2 (679-761)||(35889707-35889789)
chr2 (10-119)||(35919310-35919419)
chr2 (679-744)||(35554550-35554615)
chr2 (678-726)||(34690058-34690106)
chr2 (678-726)||(34712470-34712518)
chr2 (353-392)||(35890486-35890525)
chr2 (288-392)||(34989810-34989918)
[»] chr5 (1 HSPs)
chr5 (262-358)||(19533436-19533529)


Alignment Details
Target: chr2 (Bit Score: 162; Significance: 6e-86; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 466 - 732
Target Start/End: Complemental strand, 35887610 - 35887335
Alignment:
Q  466 cttttcttttcttggaagaagtttctgcagaagttgtttcagtttcag---gtcctt---ttctcttctttgatggcaatgttgaagaatcactactggt 559  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||   ||||||   |||||||||| |||||||||||||||||||||||||||||    
T  35887610 cttttcttttcttggaagaagtttcttcagaagttgtttcagtttcagaaggtccttcttttctcttcttggatggcaatgttgaagaatcactactggt 35887511  T
Q  560 gctgcctgcattcatccctacatcgtcatcaccaccctctttctg---atgatcagaagtagaactgatcatctttccggctgccttgttcttacgatcc 656  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||   |||||||| ||| ||||||||||||||| |  |||||||||||||| |||||    
T  35887510 gctgccttcattcatcgctacatcgtcatcaccaccctctttctgatcatgatcagtagttgaactgatcatctttgcttctgccttgttcttatgatcc 35887411  T
Q  657 tcctccacttttgcacaaccggcctcattcattgctacatcatctttctgatcagtagtggaactgatcatctttt 732  Q
    ||||||| |||||| | || | | ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  35887410 tcctccatttttgcgccactgacttcattcattgctaaatcatctttctgatcagcagtggaactgatcatctttt 35887335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 740 - 829
Target Start/End: Complemental strand, 35918939 - 35918850
Alignment:
Q  740 gttcttttgatcctcctccatttctgggctacaagaacaagaagattaaattttgattttctgtaattaatgtcaagaaacactatggaa 829  Q
    |||||| | |||||||||||| | | ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35918939 gttcttatcatcctcctccatattttggccacaagaacaagaagaataaattttgattttctgtaattaatgtcaagaaacactatggaa 35918850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 251 - 493
Target Start/End: Complemental strand, 35919197 - 35918943
Alignment:
Q  251 gaatttatgataacagattgacgaggatatgccttca-atagttcaaatatagcatccattaaatcctgcaaaacaaatattaattcaaaaaccatttat 349  Q
    |||||||||||||||||| |||||||  |||| |||| |||| |   ||||||| ||||  ||||||| ||||||||  ||||||| ||||||||| |||    
T  35919197 gaatttatgataacagatcgacgaggtaatgc-ttcagatagattgtatatagcgtccaccaaatcctacaaaacaataattaattaaaaaaccatatat 35919099  T
Q  350 ttaattaatgaaatataaaattgtatatgaaatgtgaacattgcttaattattgtta---tacctgaccaacatctaaattgagta---------tgaat 437  Q
    ||||| ||||||||||||||||| ||||| |||| ||| |||| |||||||  ||||   |||||||||| |||  ||||| | ||         |||||    
T  35919098 ttaataaatgaaatataaaattgcatatggaatgcgaagattggttaattaaagttatactacctgaccagcattcaaattcattatatgaggggtgaat 35918999  T
Q  438 cttccctcaacggaaccaggagggtgttcttttcttttcttggaagaagtttctgc 493  Q
     ||||| || ||||||||||||||||  ||||||||||||||||||||||||||||    
T  35918998 gttcccccaccggaaccaggagggtgcccttttcttttcttggaagaagtttctgc 35918943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 433 - 504
Target Start/End: Original strand, 35542304 - 35542375
Alignment:
Q  433 tgaatcttccctcaacggaaccaggagggtgttcttttcttttcttggaagaagtttctgcagaagttgttt 504  Q
    ||||||||||| || |||||||||||||| || |||||||||||| ||||||||||||||||||||| ||||    
T  35542304 tgaatcttcccccaccggaaccaggagggcgtccttttcttttctgggaagaagtttctgcagaagtagttt 35542375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 433 - 504
Target Start/End: Original strand, 35559642 - 35559713
Alignment:
Q  433 tgaatcttccctcaacggaaccaggagggtgttcttttcttttcttggaagaagtttctgcagaagttgttt 504  Q
    ||||||||||| || |||||||||||||| || |||||||||||| ||||||||||||||||||||| ||||    
T  35559642 tgaatcttcccccaccggaaccaggagggcgtccttttcttttctgggaagaagtttctgcagaagtagttt 35559713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 679 - 761
Target Start/End: Complemental strand, 35889789 - 35889707
Alignment:
Q  679 cctcattcattgctacatcatctttctgatcagtagtggaactgatcatcttttgtggctcgttcttttgatcctcctccatt 761  Q
    |||| ||||||||| ||||||||||||||||||| || |||| |||||||||||||| | |||||||  |||||| |||||||    
T  35889789 cctcgttcattgctgcatcatctttctgatcagtcgtagaaccgatcatcttttgtgtcacgttcttaagatccttctccatt 35889707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 35919419 - 35919310
Alignment:
Q  10 catcatcatcaacgagacattttacagataaagaaattatgcgaaattctccctgcatgcatgcacgcgctcacattataggatatcagagaaaaattaa 109  Q
    |||||||||||||||||||  |||||| ||||| ||||||  |||||| | |||||| |||  ||||||| || |||||| ||||| |||||||||||||    
T  35919419 catcatcatcaacgagacagattacagctaaagtaattatctgaaattttacctgcaagcaaacacgcgcacaaattataagatataagagaaaaattaa 35919320  T
Q  110 gagctttaca 119  Q
      ||||||||    
T  35919319 ttgctttaca 35919310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 679 - 744
Target Start/End: Original strand, 35554550 - 35554615
Alignment:
Q  679 cctcattcattgctacatcatctttctgatcagtagtggaactgatcatcttttgtggctcgttct 744  Q
    |||||||||||||| ||||||||||||||||||| || ||||  ||||||||||||| ||| ||||    
T  35554550 cctcattcattgctgcatcatctttctgatcagtcgtagaaccaatcatcttttgtgcctcattct 35554615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 678 - 726
Target Start/End: Original strand, 34690058 - 34690106
Alignment:
Q  678 gcctcattcattgctacatcatctttctgatcagtagtggaactgatca 726  Q
    ||||| |||||||||||||||||||||||||||||  ||||||||||||    
T  34690058 gcctctttcattgctacatcatctttctgatcagttatggaactgatca 34690106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 678 - 726
Target Start/End: Original strand, 34712470 - 34712518
Alignment:
Q  678 gcctcattcattgctacatcatctttctgatcagtagtggaactgatca 726  Q
    ||||| |||||||||||||||||||||||||||||  ||||||||||||    
T  34712470 gcctctttcattgctacatcatctttctgatcagttatggaactgatca 34712518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 392
Target Start/End: Complemental strand, 35890525 - 35890486
Alignment:
Q  353 attaatgaaatataaaattgtatatgaaatgtgaacattg 392  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  35890525 attaatgaaatataaaattgcatatgaaatgtgaagattg 35890486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 288 - 392
Target Start/End: Complemental strand, 34989918 - 34989810
Alignment:
Q  288 atagttcaaatatagcatccattaaatcctgcaaaacaaata-ttaattcaaaaaccattta---tttaattaatgaaatataaaattgtatatgaaatg 383  Q
    |||||| | ||| ||||||||  ||||||||||||| || || ||||||  |||||||| ||   |||||| ||||||||||||||||| |||||||| |    
T  34989918 atagttgatatacagcatccaccaaatcctgcaaaataattaattaattgcaaaaccatataatatttaatgaatgaaatataaaattgcatatgaaaag 34989819  T
Q  384 tgaacattg 392  Q
    |||| ||||    
T  34989818 tgaagattg 34989810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 262 - 358
Target Start/End: Original strand, 19533436 - 19533529
Alignment:
Q  262 aacagattgacgaggatatgccttcaatagttcaaatatagcatccattaaatcctgcaaaacaaatattaattcaaaaaccatttatttaattaat 358  Q
    ||||||| ||||| || |||||||  |||||||| ||||||  | ||| ||||||||||||| |   |||||||| |||||||| ||||||||||||    
T  19533436 aacagatcgacgatgagatgccttagatagttcatatatagagttcatcaaatcctgcaaaaga---attaattccaaaaccatatatttaattaat 19533529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University