View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_high_13 (Length: 550)
Name: NF15916_high_13
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 17 - 535
Target Start/End: Complemental strand, 49425747 - 49425232
Alignment:
| Q |
17 |
gccctttgaattcgagtagttgttgatcaattgattttctaacatgcaactgctgggtttggtggattgaactgtgaaccttagcttgtacacatgttaa |
116 |
Q |
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| T |
49425747 |
gccctttgaattcgagtagttgttcatcaattgattttctaacatgcaactgctgggtttggtggattgaactgtgaaccttagcttgtacacatgttaa |
49425648 |
T |
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| Q |
117 |
gaaaatattatacttaaaactcatcaacctctttttgcttgtttatgacttggactctcaaatgacttcaataagccagatccatgttctttgtagttct |
216 |
Q |
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| T |
49425647 |
gaaaatattatacttaaaactcatcaacctctttttgcttgtttatgacttggactctcaaatgacttcaataagccagatcgatgttttttgtagttct |
49425548 |
T |
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| Q |
217 |
atgctaacttatgttttcatctttgtcatatgttgtcttttctctttaacacagaagcatggacaaagactaaacaaatattttatttctcaaaggaatc |
316 |
Q |
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| T |
49425547 |
atgctaacttatgttttcatctttgtcatatgttgtcttttctctttaacacagaagcatggacaaagattaaacaaatattttatttctcaaaggaatc |
49425448 |
T |
|
| Q |
317 |
tgtatttgtctttattttgattgtactaatgttttgattgctccattacaaaaggacttatagactaaatgnnnnnnnnccggaagatttggtttattaa |
416 |
Q |
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| T |
49425447 |
tgtatttgtctttattttgattgtactaatgttttgattgctccattacaaaaggacttatagactaaatg-tttttttccggaagatttggtttattaa |
49425349 |
T |
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| Q |
417 |
gtatgtaagtaagtaccactaggacggggagtgattaagaacttaggaaaaggttcttcaagagaggagaaagttctaacatcctccaacatctcaccgc |
516 |
Q |
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| T |
49425348 |
gtatgtaagtaagtaccactaggacggggagtgattaagaacttaggaaaaggttcttca--agaggagaaagttctaacatcctccaacatctcaccgc |
49425251 |
T |
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| Q |
517 |
tatattcaaagaacctatg |
535 |
Q |
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| T |
49425250 |
tatattcaaagaacctatg |
49425232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 49444878 - 49444806
Alignment:
| Q |
255 |
tttctctttaacacagaagcatggacaaagactaaacaaatattttatttctcaaaggaatctgtatttgtct |
327 |
Q |
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| T |
49444878 |
tttctctttgacacagaagtatggacaaagcctaaacaaatagttgatttttcaaaggtatctttatttgtct |
49444806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 316
Target Start/End: Complemental strand, 49423341 - 49423259
Alignment:
| Q |
233 |
tcatctttgtcatatgttgtcttttctctttaacacagaagcatggacaaagactaaacaaatattttatttctcaaaggaatc |
316 |
Q |
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| T |
49423341 |
tcatctttgtcatgtgctatcttttctttttggcacagaagaatggacaaa-attaaacaaatatttgatttctaaaaggaatc |
49423259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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