View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15916_high_16 (Length: 500)

Name: NF15916_high_16
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15916_high_16
NF15916_high_16
[»] chr3 (17 HSPs)
chr3 (258-485)||(8253157-8253384)
chr3 (1-179)||(8252900-8253078)
chr3 (1-147)||(8350054-8350200)
chr3 (55-147)||(8352852-8352944)
chr3 (55-179)||(8356419-8356543)
chr3 (62-142)||(8334134-8334214)
chr3 (55-179)||(8360592-8360716)
chr3 (60-147)||(8260699-8260786)
chr3 (1-55)||(8356347-8356401)
chr3 (60-144)||(8258592-8258676)
chr3 (60-144)||(8265665-8265749)
chr3 (8-55)||(8258522-8258569)
chr3 (8-55)||(8265595-8265642)
chr3 (1-55)||(8260622-8260676)
chr3 (1-39)||(8334055-8334093)
chr3 (1-55)||(8360520-8360574)
chr3 (1-46)||(8352780-8352825)
[»] chr4 (1 HSPs)
chr4 (368-429)||(28288722-28288784)
[»] chr5 (1 HSPs)
chr5 (379-415)||(35057403-35057439)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 258 - 485
Target Start/End: Original strand, 8253157 - 8253384
Alignment:
Q  258 gtgggttacttgttgtgtttggtcaatgcctacttttactcgatttattctacttataggtatatatatttctcattaatagtaccgtcatttttggtta 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8253157 gtgggttacttgttgtgtttggtcaatgcctacttttactcgatttattctacttataggtatatatatttctcattaatagtaccgtcatttttggtta 8253256  T
Q  358 gcctttcatgatgcaagtgctcctatatttatgctttgagtagctcattcaaaagctggatttttcacgtgtctgcaaaaacacaaataatacatcccca 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8253257 gcctttcatgatgcaagtgctcctatatttatgctttgagtagctcattcaaaagctggatttttcacgtgtctgcaaaaactcaaataatacatcccca 8253356  T
Q  458 ttcctttattttttgttgatatggaaag 485  Q
    ||||||||||||||||||||||||||||    
T  8253357 ttcctttattttttgttgatatggaaag 8253384  T

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Target: chr3; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 8252900 - 8253078
Alignment:
Q  1 ataagaaactacaattggagctccctttgatttttccttcctctttgatttctcttgacatgaattttcagcattatcagaaacttgagaagatgagttt 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8252900 ataagaaactgcaattggagctccctttgatttttccttcctctttggtttctcttgacatgaattttcagcattatcagaaacttgagaagatgagttt 8252999  T
Q  101 gaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaataaatgaggtgggacttgaaaatgaaatgagg 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8253000 gaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaataaatgaggtgggacttgaaaatgaaatgagg 8253078  T

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Target: chr3; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 8350054 - 8350200
Alignment:
Q  1 ataagaaactacaattggagctccctttgatttttccttcctctttgatttctcttgacatgaattttcagcattatcagaaacttgagaagatgagttt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8350054 ataagaaactataattggagctccctttgatttttccttcctctttgatttctcttgacatgaattttcagcattatcagaaacttgagaagatgagttt 8350153  T
Q  101 gaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaa 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8350154 gaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaa 8350200  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 8352852 - 8352944
Alignment:
Q  55 ttgacatgaattttcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaa 147  Q
    |||| |||| |||||| ||| |||| ||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||    
T  8352852 ttgagatgatttttcatcataatcataaacttgagaagatgagttcgaagaaggaccaaagcaattgaaaaatgatgaaatcaaagccatcaa 8352944  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 8356419 - 8356543
Alignment:
Q  55 ttgacatgaattttcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaataaatga 154  Q
    |||| ||||||||| ||||| ||||||||||||||| ||||||||||||||  ||||||| ||||||||||| | | ||||||||||||| | ||| |||    
T  8356419 ttgagatgaattttgagcataatcagaaacttgagatgatgagtttgaagagagaccaaagcaattgaagaacggtaaaatcaaagccatgattaattga 8356518  T
Q  155 ggtgggacttgaaaatgaaatgagg 179  Q
    | || ||||||||| ||||||||||    
T  8356519 gatgtgacttgaaattgaaatgagg 8356543  T

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Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 8334134 - 8334214
Alignment:
Q  62 gaattttcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagcc 142  Q
    |||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||| |||||||||    
T  8334134 gaattttcagcattctcataaacttgtgaagatgagtttgaagaaggaccaaaacaattgaagtatggtgatatcaaagcc 8334214  T

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Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 8360592 - 8360716
Alignment:
Q  55 ttgacatgaattttcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaataaatga 154  Q
    |||| ||||||||||| ||| ||||||||||||||| ||| ||||||||||  |||| || ||||||||||| | ||||||||||||||| | ||| |||    
T  8360592 ttgagatgaattttcaacataatcagaaacttgagatgataagtttgaagagagaccgaagcaattgaagaaagctgaaatcaaagccatgattaattga 8360691  T
Q  155 ggtgggacttgaaaatgaaatgagg 179  Q
    | || ||||||||| |||| |||||    
T  8360692 gatgtgacttgaaattgaagtgagg 8360716  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 147
Target Start/End: Original strand, 8260699 - 8260786
Alignment:
Q  60 atgaattttcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaa 147  Q
    |||| |||||| ||| ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| ||||||||||||||||||||    
T  8260699 atgatttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaa 8260786  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8356347 - 8356401
Alignment:
Q  1 ataagaaactacaattggagctccctttgatttttccttcctctttgatttctct 55  Q
    ||||| ||||||||||||||||||| ||||||||||||| ||||||| |||||||    
T  8356347 ataaggaactacaattggagctcccattgatttttccttgctctttggtttctct 8356401  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 8258592 - 8258676
Alignment:
Q  60 atgaattttcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccat 144  Q
    |||| |||||| ||| ||||||||||||||| ||||||||||||||| | ||||| ||| | || |  |||||||||||||||||    
T  8258592 atgatttttcatcataatcagaaacttgagatgatgagtttgaagaatggccaaagcaacttaaaatggatgaaatcaaagccat 8258676  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 8265665 - 8265749
Alignment:
Q  60 atgaattttcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccat 144  Q
    |||| |||||| ||| ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| |||||||||||||||||    
T  8265665 atgatttttcatcataatcagaaacttgagacgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat 8265749  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 8258522 - 8258569
Alignment:
Q  8 actacaattggagctccctttgatttttccttcctctttgatttctct 55  Q
    |||||||||||||||||||||||||||||||| ||||||  |||||||    
T  8258522 actacaattggagctccctttgatttttccttactcttttgtttctct 8258569  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 8265595 - 8265642
Alignment:
Q  8 actacaattggagctccctttgatttttccttcctctttgatttctct 55  Q
    |||||||||||||||||||||||||||||||| ||||||  |||||||    
T  8265595 actacaattggagctccctttgatttttccttactcttttgtttctct 8265642  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8260622 - 8260676
Alignment:
Q  1 ataagaaactacaattggagctccctttgatttttccttcctctttgatttctct 55  Q
    ||||||||||||||||||||||| |||||||||||| || ||||||  |||||||    
T  8260622 ataagaaactacaattggagctctctttgatttttctttgctcttttgtttctct 8260676  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 8334055 - 8334093
Alignment:
Q  1 ataagaaactacaattggagctccctttgatttttcctt 39  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  8334055 ataagaaactacaattggaactccttttgatttttcctt 8334093  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8360520 - 8360574
Alignment:
Q  1 ataagaaactacaattggagctccctttgatttttccttcctctttgatttctct 55  Q
    ||||| ||||||||||||||||||  |||||||||||||  |||||| |||||||    
T  8360520 ataagtaactacaattggagctcctattgatttttccttgatctttggtttctct 8360574  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8352780 - 8352825
Alignment:
Q  1 ataagaaactacaattggagctccctttgatttttccttcctcttt 46  Q
    ||||||||||||||||| |||||| || ||||||||||| ||||||    
T  8352780 ataagaaactacaattgaagctccattagatttttcctttctcttt 8352825  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 429
Target Start/End: Complemental strand, 28288784 - 28288722
Alignment:
Q  368 atgcaagtgctc-ctatatttatgctttgagtagctcattcaaaagctggatttttcacgtgt 429  Q
    |||||||||||| ||||||||||||| |||||  ||||||||||||||  |||||||||||||    
T  28288784 atgcaagtgctcactatatttatgctctgagtcactcattcaaaagctaaatttttcacgtgt 28288722  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 415
Target Start/End: Complemental strand, 35057439 - 35057403
Alignment:
Q  379 cctatatttatgctttgagtagctcattcaaaagctg 415  Q
    ||||||||||||||||||||  |||||||||||||||    
T  35057439 cctatatttatgctttgagtgactcattcaaaagctg 35057403  T

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