View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_high_19 (Length: 442)
Name: NF15916_high_19
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 18460384 - 18459952
Alignment:
| Q |
1 |
ttctaatatcttccattgagaatgatccataaccaccatcatgatgattttcatttccactcattaaagggtaaccatttttgtcatgattatgtctttc |
100 |
Q |
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| T |
18460384 |
ttctaatatcttccattgagaatgatccataaccaccatcatgatgattttcatttccactcattaaagggtaaccatttttgtcttgattatgtctttc |
18460285 |
T |
|
| Q |
101 |
aacttcaacctctatgttagactctctattagacttcatttccatgtccattgaaaggaaactaccttgatgggagttttttggactcctttgtacatca |
200 |
Q |
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| T |
18460284 |
aacttcaacctctatgttagactctctattagacttcatttccatgtccattgaaaggaaactaccttgatgggagttttttggactcctttgtacatca |
18460185 |
T |
|
| Q |
201 |
gatgatcctgcaagatggaaaccagaattggattgaaaggaccctccttctcctcccattgttgatgttgacattgaattattggaacttgaaattactg |
300 |
Q |
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| T |
18460184 |
gatgatcctgcaagatggaaaccagaattggattgaaaggaccctccttctcctcccattgttgatgttgacattgaattattggaacttgaaattactg |
18460085 |
T |
|
| Q |
301 |
ttggagaagggttttggttgttgaagttttctgcctttgaatgaagattattaatttgatcaagttttgtgacacctaattcttttgatttatttgtgtt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18460084 |
ttggagaagggttttggttgttgaagttttctgcctttgaatgaagattattaatttgatcaagttttgtgacacctaattcttttgatttatttgtgtt |
18459985 |
T |
|
| Q |
401 |
atccttggagtcattattctcctcttgctcctt |
433 |
Q |
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| T |
18459984 |
atccttggagtcattattctcctcttgctcctt |
18459952 |
T |
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