View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_high_21 (Length: 417)
Name: NF15916_high_21
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_high_21 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Original strand, 47718827 - 47719227
Alignment:
| Q |
16 |
gagacagggagcgaatggtgccgaaaacttggacggaaaggattgattgaatgcggccaaatttgtcggggcgaagaagttcgagaaccttgcctctggc |
115 |
Q |
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| T |
47718827 |
gagacagggagcgaatggtgccgaaaacttggacggaaaggattgattgaatgcggccaaatttgtcggggcgaagaagttcgagaaccttgcctctggc |
47718926 |
T |
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| Q |
116 |
gacgacgatttcttgggttttaccgtcatcggagccggagaagtttccgttgattgcacagacaatgccggtgggtcgttgcagagtgagattgtagaga |
215 |
Q |
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| T |
47718927 |
gacgacgatttcttgggtaataccgtcgtctgagccggagaagttgccgttgattgcacagacaatgccggtgggtcgttgcagagtgagattgtagaga |
47719026 |
T |
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| Q |
216 |
tacatggctatgacaaagcgatgcacagaagggtttagggttttagcgatttcgatatggtaattgtgaagggtttacggttatagc-gttgggttatcg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47719027 |
tacatggctatgacaaagcgatgcacagaagggtttagggttttagagatttcgatatggtaattgtgaagggtttacggttatagcggttgggttatcg |
47719126 |
T |
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| Q |
315 |
attacgattttgataatcgtgtttttggttatggagaatggtgtttatatactcttctaatgagtgaaggaaaaggaaaataattctggaatatgggccg |
414 |
Q |
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| T |
47719127 |
attacga-tttgataatcgtgtttttggttatggagaatggtgtttatatactcttctaatgagtgaagg-aaaggaaaataattctggaatatgggccg |
47719224 |
T |
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| Q |
415 |
tgc |
417 |
Q |
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||| |
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| T |
47719225 |
tgc |
47719227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Complemental strand, 47855256 - 47854856
Alignment:
| Q |
16 |
gagacagggagcgaatggtgccgaaaacttggacggaaaggattgattgaatgcggccaaatttgtcggggcgaagaagttcgagaaccttgcctctggc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47855256 |
gagacagggagcgaatggtgccgaaaacttggacggaaaggattgattgaatgcggccaaatttgtcggggcgaagaagttcgagaaccttgcctctggc |
47855157 |
T |
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| Q |
116 |
gacgacgatttcttgggttttaccgtcatcggagccggagaagtttccgttgattgcacagacaatgccggtgggtcgttgcagagtgagattgtagaga |
215 |
Q |
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| T |
47855156 |
gacgacgatttcttgggtaataccgtcgtctgagccggagaagttgccgttgattgcacagacaatgccggtgggtcgttgcagagtgagattgtagaga |
47855057 |
T |
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| Q |
216 |
tacatggctatgacaaagcgatgcacagaagggtttagggttttagcgatttcgatatggtaattgtgaagggtttacggttatagc-gttgggttatcg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47855056 |
tacatggctatgacaaagcgatgcacagaagggtttagggttttagagatttcgatatggtaattgtgaagggtttacggttatagcggttgggttatcg |
47854957 |
T |
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| Q |
315 |
attacgattttgataatcgtgtttttggttatggagaatggtgtttatatactcttctaatgagtgaaggaaaaggaaaataattctggaatatgggccg |
414 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47854956 |
attacga-tttgataatcgtgtttttggttatggagaatggtgtttatatactcttctaatgagtgaagg-aaaggaaaataattctggaatatgggccg |
47854859 |
T |
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| Q |
415 |
tgc |
417 |
Q |
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||| |
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| T |
47854858 |
tgc |
47854856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 52208382 - 52208309
Alignment:
| Q |
149 |
gccggagaagtttccgttgattgcacagacaatgccggtgggtcgttgcagagtgagattgtagagatacatgg |
222 |
Q |
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| T |
52208382 |
gccggagaagttgccgttgatggcacagatgattccggtgggtcgttgaagagtgagattgtaaagatacatgg |
52208309 |
T |
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