View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_high_23 (Length: 409)
Name: NF15916_high_23
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 31059033 - 31059418
Alignment:
| Q |
19 |
tactcagcttaaatgctcaatgaattaataaatgcagttgcaataatctcatgattcacgttcaagatatctatatatagagcnnnnnnnatttataaaa |
118 |
Q |
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| T |
31059033 |
tactcagcttaaatgctcaatgaattaataaat-----tgcaagaatctcatgattcaggttcaagatatctatatatagatctttttttatttataaaa |
31059127 |
T |
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| Q |
119 |
ggccaattcaagatatctttagaatagtgaatatggaagattcactnnnnnnnnnn---gatgacattgataatgatcatttttgctagctagccacccc |
215 |
Q |
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| T |
31059128 |
ggccaattcaagatatctttagaatagtgaatatggaagattcactaaaaaaaaaaaaagatgacattgataatgatcatttttgctagctagccacccc |
31059227 |
T |
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| Q |
216 |
atagtcttattcattaatat------------agctgggtagctagttatcctatttttggcactcgaaagactttcctttctttgtcgacccaaaccca |
303 |
Q |
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| T |
31059228 |
atagtcttattcattaatattgcatcactaatagctgggtagctagttatcctatttttggcactcgaaagactttcccttctttgtcgacccaaaccca |
31059327 |
T |
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| Q |
304 |
aaccctagtgcacttgaaattcattggcacaagagacccttctggcaccactattgcattcactctatgattctctctttcaatcttctct |
394 |
Q |
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| T |
31059328 |
aaccctagtgcacttgaaattcattggcacaagagacccttccggcaccactattgcattcactctatgattctctctttcaatcttctct |
31059418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 230 - 393
Target Start/End: Original strand, 31067930 - 31068093
Alignment:
| Q |
230 |
taatatagctgggtagctagttatcctatttttggcactcgaaagactttcctttctttgtcgacccaaacccaaaccctagtgcacttgaaattcattg |
329 |
Q |
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| T |
31067930 |
taatatagctgggtagctagttatcctatttttggcattcgagtgactctcccatgtttgtcgacccaaacccaaaccctagtgcacttgaaatccattg |
31068029 |
T |
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| Q |
330 |
gcacaagagacccttctggcaccactattgcattcactctatgattctctctttcaatcttctc |
393 |
Q |
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| T |
31068030 |
tcacaacagacccttctggcaccactattgcattcactttctcattctctctttctatcttctc |
31068093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 31067764 - 31067801
Alignment:
| Q |
178 |
gacattgataatgatcatttttgctagctagccacccc |
215 |
Q |
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| T |
31067764 |
gacattgataatgatcatttttgctagccagccacccc |
31067801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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