View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15916_high_28 (Length: 389)

Name: NF15916_high_28
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15916_high_28
NF15916_high_28
[»] chr1 (3 HSPs)
chr1 (61-339)||(9039254-9039532)
chr1 (1-64)||(9039169-9039232)
chr1 (1-45)||(9048607-9048651)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 61 - 339
Target Start/End: Original strand, 9039254 - 9039532
Alignment:
Q  61 tatacactcttatatattgattagaattcgtgtggatctcatcataaaaatatattccaataaattatgtggatatcatatggatttcatgtcataatat 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||       
T  9039254 tatacactcttatatattgattagaattcgtgtggatctcatcataaaaatatattccaataaattatgtggatatgatatggatttcatgtcataa--- 9039350  T
Q  161 aagaatttttattgg-aacaagagatcgaattgaagagagagtgagagagtatattacctatagctt----agtgataaggtattagtcttgtaatctta 255  Q
      ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||    
T  9039351 --gaatttttattgggaacaagagatcgcattgaagagagagtgagagagtatattacctatagcttgcttagtgataaggtattagtcttgtaatctta 9039448  T
Q  256 agagatagagttcaatttcctttgtagacgtttgtaaaataaccatttgtgtcacttattaataaataatgatttactatgttc 339  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9039449 agagatatagttcaatctcctttgtagacgtttgtaaaataaccatttgtgtcacttattaataaataatgatttactatgttc 9039532  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 9039169 - 9039232
Alignment:
Q  1 tggtggcaatgagattgatgtggagtcatcgcttgagcagattaagctagtgtaaaatgttata 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9039169 tggtggcaatgagattgatgtggagtcatcgcttgagcagattaagctagtgtaaaatgttata 9039232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9048607 - 9048651
Alignment:
Q  1 tggtggcaatgagattgatgtggagtcatcgcttgagcagattaa 45  Q
    ||||||||||| |||||||||||||||||| |||||||| |||||    
T  9048607 tggtggcaatgtgattgatgtggagtcatcacttgagcaaattaa 9048651  T

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