View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_high_35 (Length: 331)
Name: NF15916_high_35
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 45407217 - 45407506
Alignment:
| Q |
18 |
ttaacaactttaaagtattgtcttagatatcagccatcaccaaatacaccaataataaacaattaatacaagctgtctagcgtcgtgactcgtgtgactg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45407217 |
ttaacaactttaaagtattgtcttagatatcagccatcaccaaatacaccaataataaacaattaatacaagctgtctagcgtcgtgactcgtgtgactg |
45407316 |
T |
|
| Q |
118 |
gtttatttaatcatgaccatagtgcaatgcatcaaaatccatgacttcgtgttcgataaatgtatgacttctctaacaattaaacttaaatggttaataa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45407317 |
gtttatttaatcatgaccatagtgcaatgcatcaaaatttatgacttcgtgtttgataaatgtatgacttctctaacaattaaacttaagtggttaataa |
45407416 |
T |
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| Q |
218 |
gttacgattaatttaaaatatttagagatgaatctttaatggaaatgattttctaccaactttttatttatcttttaaccgaactctagattatcaa |
314 |
Q |
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| T |
45407417 |
gttacgatt-------aatattttgagatgaatctttaatggaaatgattttctaccaactttttatttatcttttaaccgaactctaaattatcaa |
45407506 |
T |
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Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 10922351 - 10922524
Alignment:
| Q |
18 |
ttaacaactttaaagtattgtcttagatatcagccatcaccaaatacaccaataataaacaattaa--tacaagctgtctagcgtcgtgactcgtgtgac |
115 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||||||||||| |||||||||||||||| ||||||||| |
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| T |
10922351 |
ttaacaactttaaagtattgtcttagatattaggcatcaccaaattcaccaagaataaacaattaatttacaagctgtctagcg-------tcgtgtgac |
10922443 |
T |
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| Q |
116 |
tggtttatttaatcatgaccatagtgcaatgcatcaaaatccatgacttcgtgttcgataaatgtatgacttctctaacaatta |
199 |
Q |
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||||||||||| |||||||||||||| ||||||||||| || |||||| |||| ||||||||||| ||| ||||| |||||| |
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| T |
10922444 |
tggtttattta---atgaccatagtgcattgcatcaaaattcacgacttcatgttagataaatgtataactcctctagcaatta |
10922524 |
T |
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