View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15916_high_37 (Length: 302)

Name: NF15916_high_37
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15916_high_37
NF15916_high_37
[»] chr8 (4 HSPs)
chr8 (23-274)||(10330826-10331073)
chr8 (40-82)||(7677424-7677466)
chr8 (39-71)||(26469339-26469371)
chr8 (39-71)||(40619215-40619247)
[»] chr3 (3 HSPs)
chr3 (39-82)||(53508122-53508165)
chr3 (39-79)||(20465114-20465154)
chr3 (39-71)||(52116155-52116187)
[»] chr1 (5 HSPs)
chr1 (39-82)||(15492195-15492238)
chr1 (41-74)||(24597469-24597502)
chr1 (38-82)||(5983742-5983786)
chr1 (39-82)||(31984085-31984128)
chr1 (39-82)||(36775861-36775904)
[»] chr2 (2 HSPs)
chr2 (39-71)||(16375872-16375904)
chr2 (39-82)||(42714650-42714693)
[»] chr7 (2 HSPs)
chr7 (39-82)||(5775117-5775160)
chr7 (39-79)||(5078539-5078579)
[»] chr5 (1 HSPs)
chr5 (39-82)||(19103618-19103661)
[»] chr4 (6 HSPs)
chr4 (39-82)||(37030185-37030228)
chr4 (40-82)||(10259040-10259082)
chr4 (39-72)||(33920983-33921016)
chr4 (46-82)||(9634596-9634632)
chr4 (46-82)||(9643302-9643338)
chr4 (39-71)||(52978757-52978789)
[»] chr6 (2 HSPs)
chr6 (39-79)||(1933842-1933882)
chr6 (112-192)||(32191964-32192044)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 23 - 274
Target Start/End: Complemental strand, 10331073 - 10330826
Alignment:
Q  23 tagacgacataatcacaaaaacttgatatatgtgaaaatcatttatttatatcgaaagaacagaagaagnnnnnnnnngtgcagatataacctaaaatca 122  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || | ||           ||||||||| |||||||||||    
T  10331073 tagacgacataatcacaaaaatttaatatatgtgaaaatcatttatttatatcgaaagaagaggaaaaaaaaaga----tgcagatatgacctaaaatca 10330978  T
Q  123 ctccactttgatgaatgaaagagaaatagcatttagaaaaaattagaatttctctcgataaacaactaggaccgtcttatagacacacgccttattagct 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10330977 ctccactttgatgaatgaaagagaaatagcatttagaaaaaattagaatttctctcgataaacaactaggaccgtcttatagacacacgccttattagct 10330878  T
Q  223 gaaatgtttgaatctatgaaatatagagtattatgaaataatcaactaacaa 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10330877 gaaatgtttgaatctatgaaatatagagtattatgaaataatcaaccaacaa 10330826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 7677424 - 7677466
Alignment:
Q  40 aaaacttgatatatgtgaaaatcatttatttatatcgaaagaa 82  Q
    |||||||||||||||||||||  ||||||||| ||||||||||    
T  7677424 aaaacttgatatatgtgaaaacaatttatttagatcgaaagaa 7677466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 26469339 - 26469371
Alignment:
Q  39 aaaaacttgatatatgtgaaaatcatttattta 71  Q
    ||||||||||||||||||||||||| |||||||    
T  26469339 aaaaacttgatatatgtgaaaatcacttattta 26469371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 40619215 - 40619247
Alignment:
Q  39 aaaaacttgatatatgtgaaaatcatttattta 71  Q
    ||||||||||||||||||||||||| |||||||    
T  40619215 aaaaacttgatatatgtgaaaatcacttattta 40619247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 53508165 - 53508122
Alignment:
Q  39 aaaaacttgatatatgtgaaaatcatttatttatatcgaaagaa 82  Q
    ||||||||||||||||||||||||| |||||||||| |||||||    
T  53508165 aaaaacttgatatatgtgaaaatcacttatttatattgaaagaa 53508122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 20465114 - 20465154
Alignment:
Q  39 aaaaacttgatatatgtgaaaatcatttatttatatcgaaa 79  Q
    ||||||||||||||||| ||||||| |||||||||| ||||    
T  20465114 aaaaacttgatatatgttaaaatcacttatttatattgaaa 20465154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 52116155 - 52116187
Alignment:
Q  39 aaaaacttgatatatgtgaaaatcatttattta 71  Q
    ||||||||||||||||||||||||| |||||||    
T  52116155 aaaaacttgatatatgtgaaaatcacttattta 52116187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 15492238 - 15492195
Alignment:
Q  39 aaaaacttgatatatgtgaaaatcatttatttatatcgaaagaa 82  Q
    ||||||||||||||||||||||||||||||||| || |||||||    
T  15492238 aaaaacttgatatatgtgaaaatcatttatttagattgaaagaa 15492195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 24597469 - 24597502
Alignment:
Q  41 aaacttgatatatgtgaaaatcatttatttatat 74  Q
    ||||||||||||||||||||||||||||||||||    
T  24597469 aaacttgatatatgtgaaaatcatttatttatat 24597502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 5983786 - 5983742
Alignment:
Q  38 caaaaacttgatatatgtgaaaatcatttatttatatcgaaagaa 82  Q
    ||||||||||||| ||||||||| |||||||||| ||||||||||    
T  5983786 caaaaacttgatagatgtgaaaaccatttatttagatcgaaagaa 5983742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 31984128 - 31984085
Alignment:
Q  39 aaaaacttgatatatgtgaaaatcatttatttatatcgaaagaa 82  Q
    |||||||||||||||||||||| || ||||||| ||||||||||    
T  31984128 aaaaacttgatatatgtgaaaaccacttatttagatcgaaagaa 31984085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 36775861 - 36775904
Alignment:
Q  39 aaaaacttgatatatgtgaaaatcatttatttatatcgaaagaa 82  Q
    ||||||||||| ||||||||||||||||||||| || |||||||    
T  36775861 aaaaacttgatgtatgtgaaaatcatttatttagattgaaagaa 36775904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 16375904 - 16375872
Alignment:
Q  39 aaaaacttgatatatgtgaaaatcatttattta 71  Q
    |||||||||||||||||||||||||||||||||    
T  16375904 aaaaacttgatatatgtgaaaatcatttattta 16375872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 42714693 - 42714650
Alignment:
Q  39 aaaaacttgatatatgtgaaaatcatttatttatatcgaaagaa 82  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||    
T  42714693 aaaaacttgatatatgtaaaaatcacttatttagatcgaaagaa 42714650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 5775160 - 5775117
Alignment:
Q  39 aaaaacttgatatatgtgaaaatcatttatttatatcgaaagaa 82  Q
    |||||||||||||||||| |||||| ||||||||||| ||||||    
T  5775160 aaaaacttgatatatgtggaaatcacttatttatatcaaaagaa 5775117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 5078539 - 5078579
Alignment:
Q  39 aaaaacttgatatatgtgaaaatcatttatttatatcgaaa 79  Q
    ||||||||||||||||| ||||||| ||||||| |||||||    
T  5078539 aaaaacttgatatatgtaaaaatcacttatttagatcgaaa 5078579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 19103618 - 19103661
Alignment:
Q  39 aaaaacttgatatatgtgaaaatcatttatttatatcgaaagaa 82  Q
    ||||||||||| ||||||||||||| ||||||| ||||||||||    
T  19103618 aaaaacttgatgtatgtgaaaatcacttatttagatcgaaagaa 19103661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 37030228 - 37030185
Alignment:
Q  39 aaaaacttgatatatgtgaaaatcatttatttatatcgaaagaa 82  Q
    ||||||||||||| ||||||||||||||||||| || |||||||    
T  37030228 aaaaacttgatatgtgtgaaaatcatttatttaaattgaaagaa 37030185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 10259040 - 10259082
Alignment:
Q  40 aaaacttgatatatgtgaaaatcatttatttatatcgaaagaa 82  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||    
T  10259040 aaaacttgatatatgtgaaaaccatttgtttagatcgaaagaa 10259082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 33921016 - 33920983
Alignment:
Q  39 aaaaacttgatatatgtgaaaatcatttatttat 72  Q
    ||||||||||||||||||||||||| ||||||||    
T  33921016 aaaaacttgatatatgtgaaaatcacttatttat 33920983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 9634632 - 9634596
Alignment:
Q  46 tgatatatgtgaaaatcatttatttatatcgaaagaa 82  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  9634632 tgatatatgtgaaaatcacttatttagatcgaaagaa 9634596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 9643338 - 9643302
Alignment:
Q  46 tgatatatgtgaaaatcatttatttatatcgaaagaa 82  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  9643338 tgatatatgtgaaaatcacttatttagatcgaaagaa 9643302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 52978789 - 52978757
Alignment:
Q  39 aaaaacttgatatatgtgaaaatcatttattta 71  Q
    ||||||||||||||||||||||||| |||||||    
T  52978789 aaaaacttgatatatgtgaaaatcacttattta 52978757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 1933842 - 1933882
Alignment:
Q  39 aaaaacttgatatatgtgaaaatcatttatttatatcgaaa 79  Q
    ||||||||||||||||||||||| | ||||||| |||||||    
T  1933842 aaaaacttgatatatgtgaaaataacttatttagatcgaaa 1933882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 32191964 - 32192044
Alignment:
Q  112 acctaaaatcactccactttgatgaatgaaagagaaatagcatttagaaaaaattagaatttctctcgataaacaactagg 192  Q
    |||||||| ||| || | ||||||||||||||||||| |  | ||||| ||||||||| ||||||||  |||| |||||||    
T  32191964 acctaaaaccacccctccttgatgaatgaaagagaaagaaaacttagacaaaattagagtttctctctctaaaaaactagg 32192044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University