View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_high_4 (Length: 811)
Name: NF15916_high_4
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 10 - 464
Target Start/End: Complemental strand, 45244197 - 45243742
Alignment:
| Q |
10 |
aagaaaatactaataaggatgacaataatataatgggcttatttttcaaacataacgacaa-tagtaaattctagcatgatactttcttacaactatcca |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45244197 |
aagaaaatactaataaggatgacaataatataatgggcttatttttcaaacataaagacaaatagtaaattctagcatgatactttcttacaactatcca |
45244098 |
T |
|
| Q |
109 |
tccaattacggtcatttataatatcaaattggtagagcctaaagcctcgcaggtaggtaaaagatgattctttttggacctgaattaaacttgttaacaa |
208 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
45244097 |
tccaattacggtcatttatagtatcaaattgctagagcctaaagcctcgcaggtagctaaaagatgattctttttggccctgaattgaacttgttaacaa |
45243998 |
T |
|
| Q |
209 |
aggatggttggtttaggatttgactgctagagaatcttctttgtttggaatagaaaggtgaccttggtcttgtaggctcttaacggtttcatataaacat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45243997 |
aggatggttggtttaggatttgactgctagagaatcttctttgtttggaatagaaaggtgaccttggtcttgtaggctcttaacggtttcatataaacat |
45243898 |
T |
|
| Q |
309 |
tcactcactggtgtaaattccaatcccaaatccttcagttttttatttgagaagatatgtggtttcactcgaggattcttttcatctgaacacctgcatg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45243897 |
tcactcactggtgtaaattccaatcccaaatccttcagttttttatttgagaagatatgtggtttcactcgaggattcttttcatctgaacacctgcatg |
45243798 |
T |
|
| Q |
409 |
tgtaaaacatgaactagttaattttgaggctatgattaaaggtgaaaatattatta |
464 |
Q |
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| T |
45243797 |
tgtaaaacatgaactagttaattttgaggctatgattaaaggtgaaaatattatta |
45243742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 590 - 795
Target Start/End: Complemental strand, 45243616 - 45243415
Alignment:
| Q |
590 |
acgtagaccaaataaacaaatcaaatttggtataccaa-ctacgacacctttaatttcaattcgtctccaaaataacgaaataagagtgacttacttggt |
688 |
Q |
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|||||||||| ||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45243616 |
acgtagaccacataaacaaatcaaatttggtataaaaaactacgacaccttt-----caattcgtctccaaaataacgaaataagagtgacttacttggt |
45243522 |
T |
|
| Q |
689 |
aggaattgggtactcagggaaatacttagcaagaatttcaacaagttccccacgatgaagtgaactttcagcacataagtatctaccagaagcagaaggt |
788 |
Q |
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| T |
45243521 |
aggaattgggtactcagggaaatacttagcaagaatttcaacaagctccccacgatgaagtgaagtttcagcacataagtatctaccagaagcagaaggt |
45243422 |
T |
|
| Q |
789 |
ttctcat |
795 |
Q |
| |
|
||||||| |
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|
| T |
45243421 |
ttctcat |
45243415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 461 - 556
Target Start/End: Complemental strand, 45243718 - 45243617
Alignment:
| Q |
461 |
attaaagttttattggcattaatgatttagcatatgcccatatt-----atttagcatatgataaggaggacattggggttggt-aaggactcatacact |
554 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45243718 |
attaaagttttattggcattaatgatttagcatatgcccatattcatgaaagaagttggtgataaggaggacattggggttggtaaaggactcatacact |
45243619 |
T |
|
| Q |
555 |
cc |
556 |
Q |
| |
|
|| |
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|
| T |
45243618 |
cc |
45243617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 255 - 406
Target Start/End: Complemental strand, 866608 - 866457
Alignment:
| Q |
255 |
ggaatagaaaggtgaccttggtcttgtaggctcttaacggtttcatataaacattcactcactggtgtaaattccaatcccaaatccttcagttttttat |
354 |
Q |
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||||||| |||||| |||| |||||||| ||| |||| || ||||||||||||| |||| ||||| |||||||||||||| || ||||| |||| || |
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| T |
866608 |
ggaataggaaggtgtcctttctcttgtagactcctaacagtgtcatataaacattgcttcacaggtgtgaattccaatcccaagtctttcagcttttgat |
866509 |
T |
|
| Q |
355 |
ttgagaagatatgtggtttcactcgaggattcttttcatctgaacacctgca |
406 |
Q |
| |
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|||| || ||| |||||||||| |||||||||||||||||||| ||||| |
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|
| T |
866508 |
ttgaaaatttataaggtttcactcttggattcttttcatctgaacatctgca |
866457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 678 - 785
Target Start/End: Complemental strand, 864351 - 864244
Alignment:
| Q |
678 |
acttacttggtaggaattgggtactcagggaaatacttagcaagaatttcaacaagttccccacgatgaagtgaactttcagcacataagtatctaccag |
777 |
Q |
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|||||||||||||||| |||||||||||| |||||||| || | ||||||||||| || |||||||| | | | ||||| ||||| ||||||||||| |
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| T |
864351 |
acttacttggtaggaagtgggtactcaggaaaatacttggccaaaatttcaacaacctcaccacgatgcaaagcagtttcacaacatatgtatctaccag |
864252 |
T |
|
| Q |
778 |
aagcagaa |
785 |
Q |
| |
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|||||||| |
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|
| T |
864251 |
aagcagaa |
864244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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