View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_high_46 (Length: 238)
Name: NF15916_high_46
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_high_46 |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 26042610 - 26042447
Alignment:
| Q |
19 |
ttactaacttagaacttaatgtttttaagttggtctaagttaacaacccnnnnnnnnnngctcttgcagcaatgaagttactttagcaaaaggagttaaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || | | ||||||||||||||| |
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| T |
26042610 |
ttactaacttagaacttaatgtttttaagttggtctaagttaacaacccacaaaaaaa-gctcttgcaccaatgaaatttgtctcgcaaaaggagttaaa |
26042512 |
T |
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| Q |
119 |
ctctcataaagtgacgaacttatgttcaaatttcaattgagagagatatccatatttaaatatga |
183 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26042511 |
ctctcataaagtgacgaacttatgttcaaattttaattgagagagatatccatatttaaatatga |
26042447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 29224263 - 29224310
Alignment:
| Q |
16 |
cacttactaacttagaacttaatgtttttaagttggtctaagttaacaa |
64 |
Q |
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|||||||||||||||| ||| ||| ||||| |||||||||||||||||| |
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| T |
29224263 |
cacttactaacttagaccttcatg-ttttaggttggtctaagttaacaa |
29224310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 15560459 - 15560523
Alignment:
| Q |
113 |
gttaaactctcataaagtgacgaacttatgttcaaatttcaattgagagagatatccatatttaa |
177 |
Q |
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| T |
15560459 |
gttaaattctcataatgtgacaaacttaggttcgaattacaattgagagagatgtccatgtttaa |
15560523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 25156342 - 25156385
Alignment:
| Q |
22 |
ctaacttagaacttaatgtttttaagttggtctaagttaacaac |
65 |
Q |
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|||||||||| |||||| ||||||||||||||||||||| |||| |
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| T |
25156342 |
ctaacttagaccttaatatttttaagttggtctaagttagcaac |
25156385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 16924914 - 16924956
Alignment:
| Q |
22 |
ctaacttagaacttaatgtttttaagttggtctaagttaacaa |
64 |
Q |
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|||||||||| ||| ||||||||| |||||||||||||||||| |
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| T |
16924914 |
ctaacttagacctttatgtttttaggttggtctaagttaacaa |
16924956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 40383754 - 40383705
Alignment:
| Q |
16 |
cacttactaacttagaacttaatgtttttaagttggtctaagttaacaac |
65 |
Q |
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||||| ||||||||| ||||||||||||| |||||||||||||| |||| |
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|
| T |
40383754 |
cacttgctaacttagtccttaatgtttttaggttggtctaagttagcaac |
40383705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 8387021 - 8386976
Alignment:
| Q |
22 |
ctaacttagaacttaatgtttttaagttggtctaagttaacaaccc |
67 |
Q |
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|||||||||| |||||| ||| ||||||||||||||||| |||||| |
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| T |
8387021 |
ctaacttagaccttaatatttataagttggtctaagttagcaaccc |
8386976 |
T |
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