View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15916_high_5 (Length: 790)
Name: NF15916_high_5
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 15 - 443
Target Start/End: Complemental strand, 45244171 - 45243742
Alignment:
| Q |
15 |
aatataatgggcttatttttcaaacataacgacaa-tagtaaattctagcatgatactttcttacaactatccatccaattacggtcatttataatatca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45244171 |
aatataatgggcttatttttcaaacataaagacaaatagtaaattctagcatgatactttcttacaactatccatccaattacggtcatttatagtatca |
45244072 |
T |
|
| Q |
114 |
aattggtagagcctaaagcctcgcaggtaggtaaaagatgattctttttggacctgaattaaacttgttaacaaaggatggttggtttaggatttgactg |
213 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45244071 |
aattgctagagcctaaagcctcgcaggtagctaaaagatgattctttttggccctgaattgaacttgttaacaaaggatggttggtttaggatttgactg |
45243972 |
T |
|
| Q |
214 |
ctagagaatcttctttgtttggaatagaaaggtgaccttggtcttgtaggctcttaacggtttcatataaacattcactcactggtgtaaattccaatcc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45243971 |
ctagagaatcttctttgtttggaatagaaaggtgaccttggtcttgtaggctcttaacggtttcatataaacattcactcactggtgtaaattccaatcc |
45243872 |
T |
|
| Q |
314 |
caaatccttcagttttttatttgagaagatatgtggtttcactcgaggattcttttcatctgaacacctgcatgtgtaaaacatgaactagttaattttg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45243871 |
caaatccttcagttttttatttgagaagatatgtggtttcactcgaggattcttttcatctgaacacctgcatgtgtaaaacatgaactagttaattttg |
45243772 |
T |
|
| Q |
414 |
aggctatgattaaaggtgaaaatattatta |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
45243771 |
aggctatgattaaaggtgaaaatattatta |
45243742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 569 - 774
Target Start/End: Complemental strand, 45243616 - 45243415
Alignment:
| Q |
569 |
acgtagaccaaataaacaaatcaaatttggtataccaa-ctacgacacctttaatttcaattcgtctccaaaataacgaaataagagtgacttacttggt |
667 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45243616 |
acgtagaccacataaacaaatcaaatttggtataaaaaactacgacaccttt-----caattcgtctccaaaataacgaaataagagtgacttacttggt |
45243522 |
T |
|
| Q |
668 |
aggaattgggtactcagggaaatacttagcaagaatttcaacaagttccccacgatgaagtgaactttcagcacataagtatctaccagaagcagaaggt |
767 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45243521 |
aggaattgggtactcagggaaatacttagcaagaatttcaacaagctccccacgatgaagtgaagtttcagcacataagtatctaccagaagcagaaggt |
45243422 |
T |
|
| Q |
768 |
ttctcat |
774 |
Q |
| |
|
||||||| |
|
|
| T |
45243421 |
ttctcat |
45243415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 440 - 535
Target Start/End: Complemental strand, 45243718 - 45243617
Alignment:
| Q |
440 |
attaaagttttattggcattaatgatttagcatatgcccatatt-----atttagcatatgataaggaggacattggggttggt-aaggactcatacact |
533 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45243718 |
attaaagttttattggcattaatgatttagcatatgcccatattcatgaaagaagttggtgataaggaggacattggggttggtaaaggactcatacact |
45243619 |
T |
|
| Q |
534 |
cc |
535 |
Q |
| |
|
|| |
|
|
| T |
45243618 |
cc |
45243617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 234 - 385
Target Start/End: Complemental strand, 866608 - 866457
Alignment:
| Q |
234 |
ggaatagaaaggtgaccttggtcttgtaggctcttaacggtttcatataaacattcactcactggtgtaaattccaatcccaaatccttcagttttttat |
333 |
Q |
| |
|
||||||| |||||| |||| |||||||| ||| |||| || ||||||||||||| |||| ||||| |||||||||||||| || ||||| |||| || |
|
|
| T |
866608 |
ggaataggaaggtgtcctttctcttgtagactcctaacagtgtcatataaacattgcttcacaggtgtgaattccaatcccaagtctttcagcttttgat |
866509 |
T |
|
| Q |
334 |
ttgagaagatatgtggtttcactcgaggattcttttcatctgaacacctgca |
385 |
Q |
| |
|
|||| || ||| |||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
866508 |
ttgaaaatttataaggtttcactcttggattcttttcatctgaacatctgca |
866457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 657 - 764
Target Start/End: Complemental strand, 864351 - 864244
Alignment:
| Q |
657 |
acttacttggtaggaattgggtactcagggaaatacttagcaagaatttcaacaagttccccacgatgaagtgaactttcagcacataagtatctaccag |
756 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||| || | ||||||||||| || |||||||| | | | ||||| ||||| ||||||||||| |
|
|
| T |
864351 |
acttacttggtaggaagtgggtactcaggaaaatacttggccaaaatttcaacaacctcaccacgatgcaaagcagtttcacaacatatgtatctaccag |
864252 |
T |
|
| Q |
757 |
aagcagaa |
764 |
Q |
| |
|
|||||||| |
|
|
| T |
864251 |
aagcagaa |
864244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University