View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_high_9 (Length: 668)
Name: NF15916_high_9
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 612; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 13 - 651
Target Start/End: Complemental strand, 4749248 - 4748607
Alignment:
| Q |
13 |
agatgaataaatgagtatataatt---taccttgagtgctttatagaatggaaagccaggaagattgatcgattgggacctcattcctcgaagcaaatca |
109 |
Q |
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| T |
4749248 |
agatgaataaatgagtatataattaattaccttgagtgctttatagaatggaaagccaggaagattgatcgattgggacctcattcctcgaagcaaatca |
4749149 |
T |
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| Q |
110 |
atgtacaaatgctcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaaaacagaagtgatgacatcaaaagtgaactttttggtctctttga |
209 |
Q |
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| T |
4749148 |
atgtacaaatgctcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaagacagaagtgatgacatcaaaagtgaactttttggcctctttga |
4749049 |
T |
|
| Q |
210 |
gaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaattcgtgaccatttat |
309 |
Q |
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| T |
4749048 |
gaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaattcgtgaccatttat |
4748949 |
T |
|
| Q |
310 |
tggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattttttccctgcaagtgccatagctgaagcagggtatcct |
409 |
Q |
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| T |
4748948 |
tggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattttttccctgcaagtgccatagctgaagcagggtatcct |
4748849 |
T |
|
| Q |
410 |
ggcttgagatgttcctcgtcttttagtacattacgacatgtttctggcgagcaaactatgatggttggatacccaaacaaatgtgtcctgtacatacctg |
509 |
Q |
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| T |
4748848 |
ggcttgagatgttcctcgtcttttagtacattacgacatgtctctggcgagcaaactatgacggttggatacccaaacaaatgtgtcctgtacatacctg |
4748749 |
T |
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| Q |
510 |
tcctgccatatctgtattttataaaataaaaaccatccaaagttagtcacatttatgagcatccacgactatagatgtttttgcactatgttttgagtaa |
609 |
Q |
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| T |
4748748 |
tcctgccatatctgtattttataaaataaaaaccatccaaagttagtcacatttatgagcatccacgactatagatgtttttgcactatgttttgagtaa |
4748649 |
T |
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| Q |
610 |
attttcttgagtagtatatgttggaacattggtggaaatata |
651 |
Q |
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| T |
4748648 |
attttcttgagtagtatatgttggaacattggtggaaatata |
4748607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 38 - 522
Target Start/End: Complemental strand, 4757058 - 4756571
Alignment:
| Q |
38 |
accttgagtgctttatagaatggaaagccaggaagattgatcgattgggacctcattcctcgaagcaaatcaatgtacaaatgctcaaccaaagcaaggt |
137 |
Q |
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|||||||||||||||| ||||| ||| |||| |||||||| | | || ||||||| |||||||||||||||||||| ||||||||| |||||| |
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| T |
4757058 |
accttgagtgctttatggaatgcaaatccagtgagattgatggcgagtgatttcattcccttaagcaaatcaatgtacaaattttcaaccaaaccaaggt |
4756959 |
T |
|
| Q |
138 |
cagcatgttcacgatcagaggaaaagaaaacagaagtgatgacatcaaaagtgaactttttggtctctttgagaaactcaaccggtgtgttcgttttaga |
237 |
Q |
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| | || ||||||||||| |||| ||| | | ||||||||| ||||||| |||||| | ||||||| ||||||||| ||||||||| ||||||| |
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| T |
4756958 |
ccacgtgatcacgatcagaagaaatgaagatggtagtgatgacttcaaaagcaaactttctcatctctttaagaaactcacatggtgtgttcattttaga |
4756859 |
T |
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| Q |
238 |
cgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaa---ttcgtgaccatttattggagacgtggttacctttcgcaaa |
334 |
Q |
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| T |
4756858 |
caactcttctaaatgtttcacagcactatcctcaatgagactaatataagttgacaatgcttcgtcaccatttatgggagaagtgattaaacgtctcaaa |
4756759 |
T |
|
| Q |
335 |
cgtttatgctcggcacttgatattccatggaatgattttttccctgcaagtgccatagctgaagcagggtatcctggcttgagatgttcctcgtctttta |
434 |
Q |
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||||| || || | | |||| ||||||||||||||| |||| |||| ||| |||| | |||| ||||||||| |||||||| || ||||| ||| |
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| T |
4756758 |
cgtttgtgttcagaatttgagattccatggaatgatcttttacctgtaaggaccatggttgaatgagggtatccaaccttgagattctcttcgtcggtta |
4756659 |
T |
|
| Q |
435 |
gtacattacgacatgtttctggcgagcaaactatgatggttggatacccaaacaaatgtgtcctgtacatacctgtcctgccatatct |
522 |
Q |
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| T |
4756658 |
gaaccttacgacatgtctctggtgtgcatactatgatgcttggactaccaaacaaatgtgttctatacatacctgtctttccatatct |
4756571 |
T |
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