View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15916_low_10 (Length: 665)

Name: NF15916_low_10
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15916_low_10
NF15916_low_10
[»] chr3 (1 HSPs)
chr3 (1-659)||(32670314-32670978)


Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 659
Target Start/End: Original strand, 32670314 - 32670978
Alignment:
Q  1 tggattagaaggtttacaatcacctaaatatgttgatcagatgttgttaagtgcttctttctttgatattgattcatcatcacatttgcttggtgatgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32670314 tggattagaaggtttacaatcacctaaatatgttgatcagatgttgttaagtgcttctttctttgatattgattcatcatcacatttgcttggtgatgat 32670413  T
Q  101 ctatatgaagaaagtgatattcctttgtggaacttcagctgaagaaacgatcaaatactcnnnnnnnnnnnnnnnnnnnn--acaaaattcaattcaatt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      ||||||||||||||||||    
T  32670414 ctatatgaagaaagtgatattcctttgtggaacttcagctgaagaaacgatcaaatactcttttctttttcttttcttttttacaaaattcaattcaatt 32670513  T
Q  199 ttaattcttttgtcttcagtgatactacttgaagatattagtgtaagaaataaatctaggctctaatgccacatattacaatatatagtctgagttcaaa 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32670514 ttaattcttttgtcttcagtgatactacttgaagatattagtgtaagaaataaatctaggctctaatgccacatattacaatatatagtctgagttcaaa 32670613  T
Q  299 tttgtatatcnnnnnnngatacata----tggtgaatgttgggggaaattcatattaattacggacatgtgaannnnnnnnnnnnnnnngatatggattc 394  Q
    ||||||||||        |||||||    | ||||||||||||||||||||||||||||||||||||||||||                |||||||||||    
T  32670614 tttgtatatcttttttttatacatacatatagtgaatgttgggggaaattcatattaattacggacatgtgaatttttttggcttttttgatatggattc 32670713  T
Q  395 ttctacatatttgaaattatgtatcattgatgcaaagcttgttatgtcaatgtcgtgaacaaagggacgaaatacacgtagttatcaagagtaaataaat 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32670714 ttctacatatttgaaattatgtatcattgatgcaaagcttgttatgtcaatgtcgtgaacaaagggacgaaatacatgtagttatcaagagtaaataaat 32670813  T
Q  495 attcctttaatcatttcttaatgcaactatgggagaaaatgttgtggttatatgtgagtaactatagggaggcctttattgcatggaaagttgttagaga 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32670814 attcctttaatcatttcttaatgcaactatgggagaaaatgttgtggttatatgtgagtaactatagggaggcctttattgcatggaaagttgttagaga 32670913  T
Q  595 accttaaatcatattcatagagaataaggaacccctttattccgctcaacttcatctctctcgac 659  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||    
T  32670914 agcttaaatcatattcatagagaataaggaacccctttattccgctcaactttttttctctcgac 32670978  T

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