View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_low_11 (Length: 648)
Name: NF15916_low_11
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 19 - 626
Target Start/End: Complemental strand, 42755089 - 42754482
Alignment:
| Q |
19 |
gtttaatctctcacaatttttccacaatcacttatnnnnnnnntaatatccaaattaatctctcatatcaagagattaaattgtgtcacaagaaaattga |
118 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
42755089 |
gtttaatctctcacaatttttccacaatcacttacaaaaaaaataatatccaaattaatctctcatatcaagagattaaattgtgtgacgagaaaattga |
42754990 |
T |
|
| Q |
119 |
gaaggaccaaactcgtatatatatttttgtacacttaaaaccagtttatccgtttggacaagtgaaggtactgaatgagagttaatggagcattgagctt |
218 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42754989 |
gaaggaccaaactcgtatatatatttctctacacttaaaaccagtttatccgtttggacaagtgaaggtactgaatgagagttaatggagcattgagctt |
42754890 |
T |
|
| Q |
219 |
aagaagataagagaaggtgaaaaacaatttgagagaatgaagagaatctatctgaattgtggacaattgggtctcacccctcctacttctactacacccc |
318 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42754889 |
aagcagataagagaaggtgaaaaacaatttgagagaatgaagagaatctatctgaattgtggacaattgggtctcacccctcctacttctactacacccc |
42754790 |
T |
|
| Q |
319 |
atagctctacacattcatgtaataagcgtccttcaaggttcatgatatttgcttcttcatggcttccaaattatgcttctcttaacaataccttcattgc |
418 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42754789 |
atagctctacacattcatgtaataagcgtccttcacggttcatgatatttgcttcttcatggcttccaaattatgcttctcttaacaacaccttcattgc |
42754690 |
T |
|
| Q |
419 |
ttctgcttcttcttccctcggtggttcaggtcctcactcttcttctatctatacttcaccattgtttgtttatttttctcaatgttttgttagtgatagc |
518 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42754689 |
ttctgcttcctcttccctcggtggttcaggtcctcactcttcttctatctatacttcaccattgtttgtttatttttctcaatgttttgttagagatagc |
42754590 |
T |
|
| Q |
519 |
ttatatgtaagcatttatatgataagcgcatatgctataagcacgaaattaaatagtttatctaagcagagacttatttatttggttacttatattatgt |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42754589 |
ttatatgtaagcatttatatgataagcgcatatgctataagcacgaaattaaatagtttatctaagcagagacttatttatttggttacttatattatgt |
42754490 |
T |
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| Q |
619 |
gagttgtt |
626 |
Q |
| |
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|||||||| |
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| T |
42754489 |
gagttgtt |
42754482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 514 - 561
Target Start/End: Original strand, 22684633 - 22684680
Alignment:
| Q |
514 |
atagcttatatgtaagcatttatatgataagcgcatatgctataagca |
561 |
Q |
| |
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| T |
22684633 |
atagcttatacagaagcatttatatgataagcgcatatggtataagca |
22684680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 580
Target Start/End: Original strand, 740985 - 741051
Alignment:
| Q |
514 |
atagcttatatgtaagcatttatatgataagcgcatatgctataagcacgaaattaaatagtttatc |
580 |
Q |
| |
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|||||||||| |||||||||||||||||| ||| | ||||| | ||||| |||||||| ||||||| |
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| T |
740985 |
atagcttatacataagcatttatatgataaacgcttctgctacaggcacgtaattaaattgtttatc |
741051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 560
Target Start/End: Complemental strand, 26516251 - 26516205
Alignment:
| Q |
514 |
atagcttatatgtaagcatttatatgataagcgcatatgctataagc |
560 |
Q |
| |
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|||||||||| |||||| ||||||||||||||| |||||||||||| |
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| T |
26516251 |
atagcttatacataagcacttatatgataagcgcttatgctataagc |
26516205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 562
Target Start/End: Original strand, 20982252 - 20982300
Alignment:
| Q |
514 |
atagcttatatgtaagcatttatatgataagcgcatatgctataagcac |
562 |
Q |
| |
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|||||||||| |||||| ||||||||||||| | |||||||||||||| |
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|
| T |
20982252 |
atagcttatacataagcacttatatgataagcacttatgctataagcac |
20982300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 547
Target Start/End: Original strand, 34788544 - 34788577
Alignment:
| Q |
514 |
atagcttatatgtaagcatttatatgataagcgc |
547 |
Q |
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| T |
34788544 |
atagcttatacgtaagcatttatatgataagcgc |
34788577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 558
Target Start/End: Original strand, 28769456 - 28769500
Alignment:
| Q |
514 |
atagcttatatgtaagcatttatatgataagcgcatatgctataa |
558 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | |||||||||| |
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|
| T |
28769456 |
atagcttatacataagcatttatatgataagcacttatgctataa |
28769500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 558
Target Start/End: Original strand, 31875676 - 31875720
Alignment:
| Q |
514 |
atagcttatatgtaagcatttatatgataagcgcatatgctataa |
558 |
Q |
| |
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|||||||||| |||||| ||||||||||||||| |||||||||| |
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| T |
31875676 |
atagcttatagataagcacttatatgataagcgcttatgctataa |
31875720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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