View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_low_12 (Length: 581)
Name: NF15916_low_12
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 108 - 517
Target Start/End: Complemental strand, 49278687 - 49278282
Alignment:
| Q |
108 |
attacaaatgatttttgaaaaagacagcagaaaattgattatcagtgtctaattttggctcacctattcacttcatgcgttgtgttttatgcttaataaa |
207 |
Q |
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| T |
49278687 |
attacaaatgatttttgaaaaagacagcagaaaattgattatcagtgtctaattttggctcacctattcacttcatgcgttgtgttttatgcttaataaa |
49278588 |
T |
|
| Q |
208 |
attagtttattatatctatatgaggaggggtcaagttacacacgatgcatatggcatgtatgtcactcatccactattttaggattttccatatttttct |
307 |
Q |
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| T |
49278587 |
atttgtttattatatctatatgaggaggggtcaagttacacacgatgcatatggcatgtatgtcactcatacactattttaggattttccatatttttct |
49278488 |
T |
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| Q |
308 |
ccacacctccctgatatcctcctccgctcaaagatttggcttgttttcattcttgataaattcgggacaaactttgtcgctgtgtttagcatggctctac |
407 |
Q |
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| T |
49278487 |
ccccacctccctgatatc---ctccgctcaaagatttggcttg-tttcattcttgataaattcgggataaacttcgtcgctgtgtttagcatggctctac |
49278392 |
T |
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| Q |
408 |
acgaaaatattatactaattgttacacgtgtgcaaaggacatgactcggaatgggtttgatgaatcaacattaaaacaagtattcaattaattttgacag |
507 |
Q |
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| T |
49278391 |
acgaaaatattatactaattgttacacgtgtgcaaaggacatgactcggaatgggtttgatgaatcaacattaaaacaagtattcaattaattttgacag |
49278292 |
T |
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| Q |
508 |
ggactgaaac |
517 |
Q |
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| T |
49278291 |
ggactaaaac |
49278282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 49278808 - 49278718
Alignment:
| Q |
17 |
acatgtttggatttgaaactaaaagaaaatgacttgtatgcaattgaaattcttctggcgtgcagagaggcctttaatgaggttacccttc |
107 |
Q |
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| T |
49278808 |
acatgtttggatttgaaactaaaagaaaatgacttgtatgcaattgaaattcttctggcgtgcagagaggcctttaatgaggttacccttc |
49278718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 49285402 - 49285302
Alignment:
| Q |
147 |
tatcagtgtctaattttggctcacctattcacttcatgcgttgtgttttatgcttaataaaattagtttattatatctatatgaggaggggtcaagttac |
246 |
Q |
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| T |
49285402 |
tatcggtgtctatttttggctcacctattcatttcttgtgttgggatttatgcttaataaaatttcctgattatatctgcatgaggagggatcaagttac |
49285303 |
T |
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| Q |
247 |
a |
247 |
Q |
| |
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| |
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| T |
49285302 |
a |
49285302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 518 - 568
Target Start/End: Complemental strand, 49278300 - 49278250
Alignment:
| Q |
518 |
ttttgacagggactgaaacaaaagaggaagaaaacattttgtcttcatctc |
568 |
Q |
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| T |
49278300 |
ttttgacagggactaaaacaaaagagaaagaaaacattttgtcttcatctc |
49278250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 318
Target Start/End: Complemental strand, 862084 - 862026
Alignment:
| Q |
259 |
tggcatgtatgtcactcatccactattttaggattttccatatttttctccacacctccc |
318 |
Q |
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| T |
862084 |
tggcatgtatgtcactcatccactagtttatga-tttccatctttttctccccacctccc |
862026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 7938451 - 7938520
Alignment:
| Q |
249 |
acgatgcatatggcatgtatgtcactcatccactattttaggattttccatatttttctccacacctccc |
318 |
Q |
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| T |
7938451 |
acgatacatgtggcatgtatgccactcatccactattttaggattttccatatttttctcccaacctccc |
7938520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 52329253 - 52329193
Alignment:
| Q |
248 |
cacgatgcatatggcatgtatgtcactcatccactattttaggattttccatatttttctc |
308 |
Q |
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| T |
52329253 |
cacgatacatgtggcatgtatgctactcatccactattttaggattttccatatttttctc |
52329193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 314
Target Start/End: Complemental strand, 31416027 - 31415992
Alignment:
| Q |
279 |
cactattttaggattttccatatttttctccacacc |
314 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
31416027 |
cactattttaggattttccatatttttctccccacc |
31415992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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