View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15916_low_13 (Length: 571)
Name: NF15916_low_13
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 13 - 553
Target Start/End: Original strand, 15663602 - 15664142
Alignment:
| Q |
13 |
tatactccaatcgttttcctcgagtatttctttacatctaggaaacaaataccatgccatctcactgtttgcttgtaaagcagccaagtaaagaggagta |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15663602 |
tatactccaatcgttttcctcgagtatttctttacatttaggaaacaaatacgatgccatctcactgtttgcttgtaaagcagccaagtaaagaggagta |
15663701 |
T |
|
| Q |
113 |
acacctagtccacccctaattgatggtaactcttcattctttttgaccattatctcagcgatttgaacatttccaaccgctgcagcaaagcaaagagcag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15663702 |
acacctagtccacccctaattgatggtaacacttcattctttttcaccattatctcagcgatttgaacatttccaaccgctgcagcaaagcaaagagcag |
15663801 |
T |
|
| Q |
213 |
tgtttcccgggtaatcttgcaattccaaatcatcacgatccattagttttaccaattcctccacaaagtgaacatgatttgctcccgctgcaatatggag |
312 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15663802 |
tgtttcccgggtaatcttgcaatcccaaatcatcacgatccattagttttaccaattcctccacaaagtgaacatgatttgctcccgctgcaatatggag |
15663901 |
T |
|
| Q |
313 |
tgcggttgcccacccatttgttatggcagaaatcagcaatgtttggtcctgttctattannnnnnnaccttctttccaatccccttttagtgctgctttg |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15663902 |
tgcggttgcccacccatttgttatggcagaaatcagcaatgtttggtcctgttctattatttttttaccttctttccaatccccttttagtgctgctttg |
15664001 |
T |
|
| Q |
413 |
tgaaggggaacacattggtttatgtaccnnnnnnnatgttcctctgcaatgaaattgattgagggattaattaactcgcttcaatatctatacaattgat |
512 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15664002 |
tgaaggggaacacattggtttatgtacctttttttatgttcctctgcaatgaaattgattgagggattaattaactcgcttcaatatctatacaattgat |
15664101 |
T |
|
| Q |
513 |
aagaaaactcattttaagatatcaatatataatggtctaat |
553 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15664102 |
aagaaaactcattttaagatgtcaatatataatggtctaat |
15664142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University