View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_low_15 (Length: 511)
Name: NF15916_low_15
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 17 - 496
Target Start/End: Original strand, 4116638 - 4117117
Alignment:
| Q |
17 |
atgaagacctgtaaaatgtacacaacttagtttcatgagcttatatactagaatttcctgcaatcaggaaaagcacacatgcgcgtattgaagggatgtc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4116638 |
atgaagacctgtaaaatgtacacaacttagtttcatgagcttatagactagaatttcctgcaatcaggaaaagcacacatgcgcgtattgaagtgatgtc |
4116737 |
T |
|
| Q |
117 |
gaccattgcatgaagatccgacagtttttaaatacacatcttcaaatacaaacttccagatcgttatcaaatgatcgagattcataactacgtgacttcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4116738 |
gaccattgcatgaagatccgacagtttttaaatacacatcttcaaatacaaacttccagatcgttatcaaatgatcgagattcataactacgtgacttcc |
4116837 |
T |
|
| Q |
217 |
gaaaatcaaaatccctcgctatagtctataagtggttcaaactcaatctcattgaaaagtgaaatttatgcaatgcaaattaaattagagaatgttataa |
316 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4116838 |
gaaaatcaaaatccctcgctatagtctataagaggttcaaactcaatctcattgaaaagtgaaatttatgcaatgcaaattaaattagagaatgttataa |
4116937 |
T |
|
| Q |
317 |
ataacctgctctggtcactgcacatcagacataaatatctatttgacgctctaaatatttggaaagacactgctgtttgctctgtcaaatcctttgaagc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4116938 |
ataacctgctctggtcactgcacatcagacataaatatctatttgacgctctaaatatttggaaagacactgctgtttcctctgtcaaatcctttgaagc |
4117037 |
T |
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| Q |
417 |
taaagctaacaaaccaaacggtcctattttgccacttcttgatgcatgttgtttgctacatagtagttgaggatcaactt |
496 |
Q |
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| T |
4117038 |
taaagctaacaaaccaaacggtcctattttgccacttcttgatgcatgttgtttgctacatagtagttgaggatcaactt |
4117117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 496
Target Start/End: Original strand, 4136891 - 4136978
Alignment:
| Q |
409 |
tttgaagctaaagctaacaaaccaaacggtcctattttgccacttcttgatgcatgttgtttgctacatagtagttgaggatcaactt |
496 |
Q |
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||||| ||||||||| ||||||||| |||||||| ||||| |||||||||||| ||||| |||| ||| |||||||||||||| |
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| T |
4136891 |
tttgatgctaaagcttgcaaaccaaatggtcctatcatgccatttcttgatgcatattgttctttacagagttcttgaggatcaactt |
4136978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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