View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15916_low_17 (Length: 500)

Name: NF15916_low_17
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15916_low_17
NF15916_low_17
[»] chr3 (17 HSPs)
chr3 (258-485)||(8253157-8253384)
chr3 (1-179)||(8252900-8253078)
chr3 (1-147)||(8350054-8350200)
chr3 (55-147)||(8352852-8352944)
chr3 (55-179)||(8356419-8356543)
chr3 (62-142)||(8334134-8334214)
chr3 (55-179)||(8360592-8360716)
chr3 (60-147)||(8260699-8260786)
chr3 (1-55)||(8356347-8356401)
chr3 (60-144)||(8258592-8258676)
chr3 (60-144)||(8265665-8265749)
chr3 (8-55)||(8258522-8258569)
chr3 (8-55)||(8265595-8265642)
chr3 (1-55)||(8260622-8260676)
chr3 (1-39)||(8334055-8334093)
chr3 (1-55)||(8360520-8360574)
chr3 (1-46)||(8352780-8352825)
[»] chr4 (1 HSPs)
chr4 (368-429)||(28288722-28288784)
[»] chr5 (1 HSPs)
chr5 (379-415)||(35057403-35057439)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 258 - 485
Target Start/End: Original strand, 8253157 - 8253384
Alignment:
Q  258 gtgggttacttgttgtgtttggtcaatgcctacttttactcgatttattctacttataggtatatatatttctcattaatagtaccgtcatttttggtta 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8253157 gtgggttacttgttgtgtttggtcaatgcctacttttactcgatttattctacttataggtatatatatttctcattaatagtaccgtcatttttggtta 8253256  T
Q  358 gcctttcatgatgcaagtgctcctatatttatgctttgagtagctcattcaaaagctggatttttcacgtgtctgcaaaaacacaaataatacatcccca 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8253257 gcctttcatgatgcaagtgctcctatatttatgctttgagtagctcattcaaaagctggatttttcacgtgtctgcaaaaactcaaataatacatcccca 8253356  T
Q  458 ttcctttattttttgttgatatggaaag 485  Q
    ||||||||||||||||||||||||||||    
T  8253357 ttcctttattttttgttgatatggaaag 8253384  T

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Target: chr3; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 8252900 - 8253078
Alignment:
Q  1 ataagaaactacaattggagctccctttgatttttccttcctctttgatttctcttgacatgaattttcagcattatcagaaacttgagaagatgagttt 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8252900 ataagaaactgcaattggagctccctttgatttttccttcctctttggtttctcttgacatgaattttcagcattatcagaaacttgagaagatgagttt 8252999  T
Q  101 gaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaataaatgaggtgggacttgaaaatgaaatgagg 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8253000 gaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaataaatgaggtgggacttgaaaatgaaatgagg 8253078  T

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Target: chr3; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 8350054 - 8350200
Alignment:
Q  1 ataagaaactacaattggagctccctttgatttttccttcctctttgatttctcttgacatgaattttcagcattatcagaaacttgagaagatgagttt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8350054 ataagaaactataattggagctccctttgatttttccttcctctttgatttctcttgacatgaattttcagcattatcagaaacttgagaagatgagttt 8350153  T
Q  101 gaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaa 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8350154 gaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaa 8350200  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 8352852 - 8352944
Alignment:
Q  55 ttgacatgaattttcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaa 147  Q
    |||| |||| |||||| ||| |||| ||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||    
T  8352852 ttgagatgatttttcatcataatcataaacttgagaagatgagttcgaagaaggaccaaagcaattgaaaaatgatgaaatcaaagccatcaa 8352944  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 8356419 - 8356543
Alignment:
Q  55 ttgacatgaattttcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaataaatga 154  Q
    |||| ||||||||| ||||| ||||||||||||||| ||||||||||||||  ||||||| ||||||||||| | | ||||||||||||| | ||| |||    
T  8356419 ttgagatgaattttgagcataatcagaaacttgagatgatgagtttgaagagagaccaaagcaattgaagaacggtaaaatcaaagccatgattaattga 8356518  T
Q  155 ggtgggacttgaaaatgaaatgagg 179  Q
    | || ||||||||| ||||||||||    
T  8356519 gatgtgacttgaaattgaaatgagg 8356543  T

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Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 8334134 - 8334214
Alignment:
Q  62 gaattttcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagcc 142  Q
    |||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||| |||||||||    
T  8334134 gaattttcagcattctcataaacttgtgaagatgagtttgaagaaggaccaaaacaattgaagtatggtgatatcaaagcc 8334214  T

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Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 8360592 - 8360716
Alignment:
Q  55 ttgacatgaattttcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaataaatga 154  Q
    |||| ||||||||||| ||| ||||||||||||||| ||| ||||||||||  |||| || ||||||||||| | ||||||||||||||| | ||| |||    
T  8360592 ttgagatgaattttcaacataatcagaaacttgagatgataagtttgaagagagaccgaagcaattgaagaaagctgaaatcaaagccatgattaattga 8360691  T
Q  155 ggtgggacttgaaaatgaaatgagg 179  Q
    | || ||||||||| |||| |||||    
T  8360692 gatgtgacttgaaattgaagtgagg 8360716  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 147
Target Start/End: Original strand, 8260699 - 8260786
Alignment:
Q  60 atgaattttcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaa 147  Q
    |||| |||||| ||| ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| ||||||||||||||||||||    
T  8260699 atgatttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaa 8260786  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8356347 - 8356401
Alignment:
Q  1 ataagaaactacaattggagctccctttgatttttccttcctctttgatttctct 55  Q
    ||||| ||||||||||||||||||| ||||||||||||| ||||||| |||||||    
T  8356347 ataaggaactacaattggagctcccattgatttttccttgctctttggtttctct 8356401  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 8258592 - 8258676
Alignment:
Q  60 atgaattttcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccat 144  Q
    |||| |||||| ||| ||||||||||||||| ||||||||||||||| | ||||| ||| | || |  |||||||||||||||||    
T  8258592 atgatttttcatcataatcagaaacttgagatgatgagtttgaagaatggccaaagcaacttaaaatggatgaaatcaaagccat 8258676  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 8265665 - 8265749
Alignment:
Q  60 atgaattttcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccat 144  Q
    |||| |||||| ||| ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| |||||||||||||||||    
T  8265665 atgatttttcatcataatcagaaacttgagacgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat 8265749  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 8258522 - 8258569
Alignment:
Q  8 actacaattggagctccctttgatttttccttcctctttgatttctct 55  Q
    |||||||||||||||||||||||||||||||| ||||||  |||||||    
T  8258522 actacaattggagctccctttgatttttccttactcttttgtttctct 8258569  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 8265595 - 8265642
Alignment:
Q  8 actacaattggagctccctttgatttttccttcctctttgatttctct 55  Q
    |||||||||||||||||||||||||||||||| ||||||  |||||||    
T  8265595 actacaattggagctccctttgatttttccttactcttttgtttctct 8265642  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8260622 - 8260676
Alignment:
Q  1 ataagaaactacaattggagctccctttgatttttccttcctctttgatttctct 55  Q
    ||||||||||||||||||||||| |||||||||||| || ||||||  |||||||    
T  8260622 ataagaaactacaattggagctctctttgatttttctttgctcttttgtttctct 8260676  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 8334055 - 8334093
Alignment:
Q  1 ataagaaactacaattggagctccctttgatttttcctt 39  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  8334055 ataagaaactacaattggaactccttttgatttttcctt 8334093  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8360520 - 8360574
Alignment:
Q  1 ataagaaactacaattggagctccctttgatttttccttcctctttgatttctct 55  Q
    ||||| ||||||||||||||||||  |||||||||||||  |||||| |||||||    
T  8360520 ataagtaactacaattggagctcctattgatttttccttgatctttggtttctct 8360574  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8352780 - 8352825
Alignment:
Q  1 ataagaaactacaattggagctccctttgatttttccttcctcttt 46  Q
    ||||||||||||||||| |||||| || ||||||||||| ||||||    
T  8352780 ataagaaactacaattgaagctccattagatttttcctttctcttt 8352825  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 429
Target Start/End: Complemental strand, 28288784 - 28288722
Alignment:
Q  368 atgcaagtgctc-ctatatttatgctttgagtagctcattcaaaagctggatttttcacgtgt 429  Q
    |||||||||||| ||||||||||||| |||||  ||||||||||||||  |||||||||||||    
T  28288784 atgcaagtgctcactatatttatgctctgagtcactcattcaaaagctaaatttttcacgtgt 28288722  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 415
Target Start/End: Complemental strand, 35057439 - 35057403
Alignment:
Q  379 cctatatttatgctttgagtagctcattcaaaagctg 415  Q
    ||||||||||||||||||||  |||||||||||||||    
T  35057439 cctatatttatgctttgagtgactcattcaaaagctg 35057403  T

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