View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_low_18 (Length: 499)
Name: NF15916_low_18
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 35 - 476
Target Start/End: Original strand, 18460362 - 18460804
Alignment:
| Q |
35 |
attctcaatggaagatattagaaggtttaatgttagtgagcaattagctcctaggttccatggaaatggtgtttctctaactcttggactacctcataat |
134 |
Q |
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| T |
18460362 |
attctcaatggaagatattagaaggtttaatgttagtgagcaattagctcctaggttccatggaaatggtgtttctctaactcttggactacctcataat |
18460461 |
T |
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| Q |
135 |
gaaaatatccctctctcttcaacccaacatggatttctctctcagaatttacatttaggagggaccattgatgaaatgggaagcaatgagaatgagtttt |
234 |
Q |
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| T |
18460462 |
gaaaatatccctctctcttcaacccaacatggatttctctctcagaatttacatttaggagggacgattgatgaaatgggaagcaatgagaatgagtttt |
18460561 |
T |
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| Q |
235 |
gtacgatcaacaccactccttctcattcagaaacaaattatgagagtattgatattgaaaacagaaagaggtttgctgctcagttattgcgaaattttgt |
334 |
Q |
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| T |
18460562 |
gtaccatcaacactactccttctcattcagaaacaaattatgagagtattgatattgaaaacagaaagaggtttgctgctcagttattgcgaaattttgt |
18460661 |
T |
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| Q |
335 |
gacctagatattaatgtgattttgacaaaaactatacttcgaagtttcaacaaaatcctggtgtaatgtgatttcatcaaactcagtgccagttgaagc- |
433 |
Q |
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| T |
18460662 |
gacctagaaattaatgtgattttgacaaaaactacacttcgaagtttcaacaaaatcctggtgtaatgtgatttcatcaaactcagtgccagttgaagca |
18460761 |
T |
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| Q |
434 |
aaacgcttaatatataattataagactcaagttgagttggatc |
476 |
Q |
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| T |
18460762 |
aaacacttaatatataattataagactcaagttgagttggatc |
18460804 |
T |
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