View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_low_19 (Length: 466)
Name: NF15916_low_19
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 53819520 - 53819068
Alignment:
| Q |
1 |
acatatgaaaatttcatggagacgttcataataacctctcacatgtttacaccaccaaaaatcgaaaaataaataaattttcacgtgccaaatttcttgt |
100 |
Q |
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| T |
53819520 |
acatatgaaaatttcatggagacgttcataataacctctcacatgtttacaccaccaaaaatcgaaaaataaataaattttcacgtgccaaatttcttgt |
53819421 |
T |
|
| Q |
101 |
tatagaacaaatatacattgcttattttaaacctacgatgaactataatgatacactcattatttaggaaaattaataccagaagaataaaatagagaaa |
200 |
Q |
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| T |
53819420 |
tatagaacaaatatacattgcttatattacacctacgatgaactataatgatacactcattatttaggaaaattaataccagaagaataaaatagagaaa |
53819321 |
T |
|
| Q |
201 |
aagcaaataatagaggaaaatttgagtattgcatgattgtgggaggaagaattattattgcacatggcatgtttgtgtttcttaaattgaaagaggacat |
300 |
Q |
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| T |
53819320 |
aagcaaataatagaggaaaatttgagtattgcatgattgtgggaggaagaactattattgcacatggcatgtttgtgtttcttaaattgaaagaggacat |
53819221 |
T |
|
| Q |
301 |
gaatcgtggatgacaactaattacagtttcatttgccggtacctgatctgctaatccattaaggatattgggaaggtttagcatgttaggcctaacatta |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
53819220 |
gaatcgtggatgacaactaattacagtttcatttgccggtacctgatctgctaatccattaaggatagtgggaaggtttagcatgttaggcctaacatta |
53819121 |
T |
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| Q |
401 |
caactaactcataaataattagtgcacatgatttcttaagctaatacgaatat |
453 |
Q |
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| T |
53819120 |
caactaactcataaataattagtgcacatgatttcttaagctaatacgaatat |
53819068 |
T |
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