View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_low_20 (Length: 465)
Name: NF15916_low_20
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 205 - 462
Target Start/End: Complemental strand, 41028347 - 41028099
Alignment:
| Q |
205 |
ttgttacaaattgttgtttctcttgaaataagtataattgtctctttgataaattaatattaacataatataatcaaccgtagtgatgcatttcttctta |
304 |
Q |
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| T |
41028347 |
ttgttacaaattgttgtttctcttgaaataagtataattgtctctttgataaattaatattaacataatataatcaaccgtagtgatgcatttcttctta |
41028248 |
T |
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| Q |
305 |
caagaaatgttgattttcttttcaacaaacaagcatcgatcaaagcgtgaatttaatgaagattgactgaatttcctcaatagtgatttcttttgtttca |
404 |
Q |
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| T |
41028247 |
caagaaatgttgattttcttttcaacaaacaagcatcgatggaagcgtgaatttaatgaagattgattgaatttcctcaataatgatttcttttgtttca |
41028148 |
T |
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| Q |
405 |
agtaattggtgttgagggaggaacttcgtctctcagttgtgagttcctttgcttctcc |
462 |
Q |
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| T |
41028147 |
---------tgctgagggaggaacttcgtctctcagttgtgagttccttaacttctcc |
41028099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 41028581 - 41028502
Alignment:
| Q |
51 |
cgaactgttctggtttatgggtaccacacttctcaattaaaaatgagtcagcaagaaacctctctataactctcactctc |
130 |
Q |
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| T |
41028581 |
cgaactgttctggtttatgggtaccacacttctcaattaaaaatgagtcagcaagaaacctctctataactctaactctc |
41028502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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