View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_low_23 (Length: 425)
Name: NF15916_low_23
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 46129233 - 46128840
Alignment:
| Q |
18 |
aacaaatttttggtatcttaacatcatagaataattagttcttctactctatccttctaacatt-aagtgtcaagtttagcatatttcgttagagtcata |
116 |
Q |
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| T |
46129233 |
aacaaatttttggtatcttaacatcatggaataattagttcttctactctatccttctaacatttaagtgtcaagtttagcatatttcgttagagtcata |
46129134 |
T |
|
| Q |
117 |
ttattaaccattttcaattactaatggagtattaattgcccttctttttcactaatatctccatttatactatagaaattagtatagtgaatgattttgt |
216 |
Q |
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| T |
46129133 |
ttattaaccattttcaattactaatggagtattaattgcccttctttttcactaatatctccatttatactatagaaattagtatagtgaatgattttgt |
46129034 |
T |
|
| Q |
217 |
taagaagtatgcataaactacagagagattttaccttggccattatatctttatagtcctgcacgttgaaatccaagtcaccaccaattgtatggacatg |
316 |
Q |
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| T |
46129033 |
taagaagtatgcataaactacagagagattttaccttggccattatatctttatagtcctgcacgttgaaatccaagtcaccaccaattgtatggacatg |
46128934 |
T |
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| Q |
317 |
tcagaaaaagcttgaatcatgagattattgtaaagttgagaatatggtaaaataaataatggtttcttgattgagtaatcttgaatttgaaaga |
410 |
Q |
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| T |
46128933 |
tcagaaaaagcttgaatcatgagattattgtaaagttgagaatatggtaaaataaataattgtttcttgattgagtaatcttgaatttgaaaga |
46128840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 242 - 410
Target Start/End: Complemental strand, 46701773 - 46701605
Alignment:
| Q |
242 |
agattttaccttggccattatatctttatagtcctgcacgttgaaatccaagtcaccaccaattgtatggacatgtcagaaaaagcttgaatcatgagat |
341 |
Q |
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| T |
46701773 |
agattttaccttggccattataacatcatattcctgcacgttgaaatccaagtcaccaccaattgtatggacatgtcagaaaaagcttgaatcatgagat |
46701674 |
T |
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| Q |
342 |
tattgtaaagttgagaatatggtaaaataaataatggtttcttgattgagtaatcttgaatttgaaaga |
410 |
Q |
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| T |
46701673 |
tattgtaaagttgagaatatggtaaaataaataattgtttcttgactgagtaatcttgaatttgaaaga |
46701605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 46702052 - 46701885
Alignment:
| Q |
18 |
aacaaatttttggtatcttaacat--catagaataattagttcttctactctatccttctaacattaagtgtcaagtttagcatatttcgttagagtcat |
115 |
Q |
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| T |
46702052 |
aacaaatttttggtatcttaacatatcatagaataattagttcttctaatctatccttctaacattaagtgtcaagtttggcatatttcgttagagtcat |
46701953 |
T |
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| Q |
116 |
attattaaccattttcaattactaatggagtattaattgcccttctttttcactaatatctccatttat |
184 |
Q |
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| T |
46701952 |
attattaaccattttc-attactaatggagtattatttacccttttttttcactaatatctccatttat |
46701885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 46123008 - 46122952
Alignment:
| Q |
188 |
atagaaattagtatagtgaatgattttgttaagaagtatgcataaactacagagaga |
244 |
Q |
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| T |
46123008 |
atagaaattagtatagtgaatgattttgttaagaagtatgcataaactacagagaga |
46122952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 46701847 - 46701800
Alignment:
| Q |
197 |
agtatagtgaatgattttgttaagaagtatgcataaactacagagaga |
244 |
Q |
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| T |
46701847 |
agtatagtgaaagattttgttaagaagtatgcataaactacagagaga |
46701800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 46123241 - 46123107
Alignment:
| Q |
19 |
acaaatttttggtatcttaacat--catagaataattagttcttctactctatccttctaacattaagtgtcaagtttagcatatttcgttagagtcata |
116 |
Q |
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|||| |||||||||||||||||| |||||| || ||||||||| ||||| ||| ||| |||| | | |||||||||| ||| |||||| | |||||| |
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| T |
46123241 |
acaagtttttggtatcttaacatatcatagactagttagttcttttactccctccatct--catttaatttcaagtttagaataattcgtttgtgtcata |
46123144 |
T |
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| Q |
117 |
ttattaaccattttcaattactaatggagtattaatt |
153 |
Q |
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|||| ||||||| |||||||||||||| ||||||| |
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| T |
46123143 |
ttatctgccattttaaattactaatggagcattaatt |
46123107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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