View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_low_26 (Length: 412)
Name: NF15916_low_26
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_low_26 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 398
Target Start/End: Original strand, 47854503 - 47854879
Alignment:
| Q |
19 |
actagaaactgaaacttaaaatttaagtggagattttaccttaactttggagataaacctaacaaaactcttacgagaacagattttaggaacaagattc |
118 |
Q |
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| T |
47854503 |
actagaaactgaaacttaaaatttaagtggagattataccttaactttggagataaccctaacaaaactcttacgagaacagattttaggaacaagattc |
47854602 |
T |
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| Q |
119 |
aactatgggtcgatttagagaaatcatttgatgcgtacagaaggaacataaattgggtgaaaaatgaactggagaaggaataggtcgatttt-gaactca |
217 |
Q |
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| T |
47854603 |
aactatgggtcgatttagagaaatcatttgatgcgtacagaaggaacataaattgggtgaaaaatgaactggagaaggaataggtcgatttttgaactca |
47854702 |
T |
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| Q |
218 |
cagaaaggaagatgaaatgagacagtgaaaatacaaatcctgcactgcactgcacatacgttcaagttcaaa-caa-acatacagaactcttggattaag |
315 |
Q |
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| T |
47854703 |
gagaaaggaagatgaaacgagacagtgaaaatacaaatcctgcactgcacg-----tacgttcaagttcaactcaagacatacagaactcttggattaag |
47854797 |
T |
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| Q |
316 |
ggcaaattgggaaattcagggggcataaaagatttttgggtatttaccaaataaaagaagcacggcccatattccagaattat |
398 |
Q |
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| T |
47854798 |
ggcaaattgggaaattcagggggcataaaagatttttgggta-ttaccaaataaaaaaagcacggcccatattccagaattat |
47854879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 398
Target Start/End: Complemental strand, 47719580 - 47719204
Alignment:
| Q |
19 |
actagaaactgaaacttaaaatttaagtggagattttaccttaactttggagataaacctaacaaaactcttacgagaacagattttaggaacaagattc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47719580 |
actagaaactgaaacttaaaatttaagtggagattttaccttaactttggagataaccctaacaaaactcttacgagaacagattttaggaacaagattc |
47719481 |
T |
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| Q |
119 |
aactatgggtcgatttagagaaatcatttgatgcgtacagaaggaacataaattgggtgaaaaatgaactggagaaggaataggtcgatttt-gaactca |
217 |
Q |
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||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
47719480 |
aacaataggtcgacttagagaaatcatttgatgcgtacagaaggaacataaattgggtgaaaaatgaactggagaaggaataggtcgatttttgaactca |
47719381 |
T |
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| Q |
218 |
cagaaaggaagatgaaatgagacagtgaaaatacaaatcctgcactgcactgcacatacgttcaagttcaaa-caa-acatacagaactcttggattaag |
315 |
Q |
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| T |
47719380 |
gagaaaggaagatgaaatgagacagtgaaaatacaaatcctgcactgcacg-----tacgttcaagttcaactcaagacatacagaactcttggattaag |
47719286 |
T |
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| Q |
316 |
ggcaaattgggaaattcagggggcataaaagatttttgggtatttaccaaataaaagaagcacggcccatattccagaattat |
398 |
Q |
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| T |
47719285 |
ggcaaattgggaaattcagggggcataaaagatttttgggta-ttaccaaataaaaaaagcacggcccatattccagaattat |
47719204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 355
Target Start/End: Original strand, 15806 - 15868
Alignment:
| Q |
293 |
acatacagaactcttggattaagggcaaattgggaaattcagggggcataaaagatttttggg |
355 |
Q |
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| T |
15806 |
acatacaaaactcttgaatttagggcaaattgaaaaattcacggggcataaaagatttttggg |
15868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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