View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15916_low_30 (Length: 397)

Name: NF15916_low_30
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15916_low_30
NF15916_low_30
[»] scaffold0043 (1 HSPs)
scaffold0043 (7-360)||(53651-54004)
[»] chr3 (35 HSPs)
chr3 (8-355)||(27377470-27377826)
chr3 (144-355)||(27348275-27348486)
chr3 (200-355)||(12147126-12147281)
chr3 (37-236)||(1366791-1366982)
chr3 (37-164)||(27390789-27390918)
chr3 (174-262)||(18025164-18025252)
chr3 (80-186)||(28005121-28005227)
chr3 (64-139)||(27459606-27459681)
chr3 (61-119)||(18025265-18025323)
chr3 (197-319)||(27390664-27390783)
chr3 (81-175)||(28003473-28003567)
chr3 (81-139)||(28036716-28036774)
chr3 (81-137)||(27919627-27919683)
chr3 (81-137)||(27979755-27979811)
chr3 (66-137)||(26235972-26236043)
chr3 (250-356)||(27979930-27980033)
chr3 (66-191)||(26179487-26179612)
chr3 (64-137)||(26128187-26128260)
chr3 (64-137)||(26178237-26178310)
chr3 (64-137)||(26202074-26202147)
chr3 (83-175)||(26628943-26629035)
chr3 (302-353)||(18025067-18025118)
chr3 (81-120)||(28151215-28151254)
chr3 (64-110)||(26129518-26129564)
chr3 (208-341)||(26630753-26630884)
chr3 (68-138)||(28084320-28084390)
chr3 (82-135)||(8539820-8539873)
chr3 (83-135)||(19476150-19476202)
chr3 (255-355)||(28005296-28005393)
chr3 (64-139)||(11420327-11420402)
chr3 (352-387)||(27348510-27348545)
chr3 (352-387)||(27377850-27377885)
chr3 (64-122)||(26630609-26630667)
chr3 (73-110)||(26140160-26140197)
chr3 (302-346)||(8539647-8539691)
[»] chr2 (2 HSPs)
chr2 (8-355)||(22392399-22392755)
chr2 (8-60)||(22398709-22398761)
[»] scaffold1142 (1 HSPs)
scaffold1142 (64-139)||(1327-1402)


Alignment Details
Target: scaffold0043 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 7 - 360
Target Start/End: Complemental strand, 54004 - 53651
Alignment:
Q  7 gtcattgtgaatttaaagctaaaagtcaattattaaagaaattaaattttactcacaactacttagaaatattctgcaactaatttacattttcatgcta 106  Q
    |||||||||||||||||||||||| |||  ||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  54004 gtcattgtgaatttaaagctaaaaatcatgtattaaataaattaaattttactcacaactacttaaaaatattgtgcaactaatttacattttcatgcta 53905  T
Q  107 tgcaatcagttggaggattcaacgtcagaaaaacctgtagcggaatctttgtccaccacttcagcaacagaaaatgagccacctgtaccggtcattgatc 206  Q
    ||| |||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||  ||||||||||    
T  53904 tgctatcagttggagggttcaacgccagaaaaacctgtagcggaatctttgtctaccacttcagcaacagaaaatgagcctcctatacaagtcattgatc 53805  T
Q  207 ataaacaaaaggcatttcctctattttgctcatatttattctgacacttttccaatacaggaattgaattatatatactgcaaactgaaacatcctttaa 306  Q
    ||||||||||||||||| |||||||||||||||||| ||||| | |||||| |||| |||||||||||||||||||||| ||||||||||||||||||||    
T  53804 ataaacaaaaggcattttctctattttgctcatattcattcttatacttttacaatgcaggaattgaattatatatactacaaactgaaacatcctttaa 53705  T
Q  307 ttttaagcagggtgtcgagataactgttgaagaagtaactgcattaactcattc 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  53704 ttttaagcagggtgtcgagataactgttgaagaagtaactgcattaactaattc 53651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 355
Target Start/End: Original strand, 27377470 - 27377826
Alignment:
Q  8 tcattgtgaatttaaagctaaaagtcaattattaaagaaattaaattttactca---------caactacttagaaatattctgcaactaatttacattt 98  Q
    |||||||| || | ||||||||| |||| ||||||||||| ||||||||||||          |||||||||| ||||||||||||||||||||| ||||    
T  27377470 tcattgtgcatattaagctaaaaatcaagtattaaagaaaataaattttactctaacaggtagcaactacttaaaaatattctgcaactaatttatattt 27377569  T
Q  99 tcatgctatgcaatcagttggaggattcaacgtcagaaaaacctgtagcggaatctttgtccaccacttcagcaacagaaaatgagccacctgtaccggt 198  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||  ||    
T  27377570 tcatgctatgcaattagttggaggattcaacgtcagaaaaacctgtagcggaactgttgtccaccacttcagcaacagaaaatgagccacctgtacaagt 27377669  T
Q  199 cattgatcataaacaaaaggcatttcctctattttgctcatatttattctgacacttttccaatacaggaattgaattatatatactgcaaactgaaaca 298  Q
     |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||    
T  27377670 gattgatcataaacaaaaggcatttcctctattttgctcgtatttattctgacacttttccaatgcaggaattgaattatatatactacagactgaaaca 27377769  T
Q  299 tcctttaattttaagcagggtgtcgagataactgttgaagaagtaactgcattaact 355  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  27377770 tcctttaattttaagcagggtattgagataactgttgaagaagtaactgcattaact 27377826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 144 - 355
Target Start/End: Original strand, 27348275 - 27348486
Alignment:
Q  144 tagcggaatctttgtccaccacttcagcaacagaaaatgagccacctgtaccggtcattgatcataaacaaaaggcatttcctctattttgctcatattt 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||     
T  27348275 tagcggaatctttgtccaccacttcagcaacagaaaatgagccacctgtaccagtcattgatcataaacaaaaggcatttcctctatttttctcgtattc 27348374  T
Q  244 attctgacacttttccaatacaggaattgaattatatatactgcaaactgaaacatcctttaattttaagcagggtgtcgagataactgttgaagaagta 343  Q
    ||||||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27348375 attctgacacttttccaatgcagtaattgaattatatttactacaaactgaaacatcctttaattttaagcagggtgtcgagataactgttgaagaagta 27348474  T
Q  344 actgcattaact 355  Q
    ||||||||||||    
T  27348475 actgcattaact 27348486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 200 - 355
Target Start/End: Original strand, 12147126 - 12147281
Alignment:
Q  200 attgatcataaacaaaaggcatttcctctattttgctcatatttattctgacacttttccaatacaggaattgaattatatatactgcaaactgaaacat 299  Q
    |||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| ||||||||| |||||||||||| |||||||||||||    
T  12147126 attgatcataaacaaaaggcatttcctctattttgcttgtatttactctgacacttttccaatgcaggaattgtattatatatactacaaactgaaacat 12147225  T
Q  300 cctttaattttaagcagggtgtcgagataactgttgaagaagtaactgcattaact 355  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12147226 cctttaattttaagcagggtatcgagataactgttgaagaagtaactgcattaact 12147281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 37 - 236
Target Start/End: Complemental strand, 1366982 - 1366791
Alignment:
Q  37 tattaaagaaattaaattttactcacaactacttagaaatattctgcaactaatttacattttcatgctatgcaatcagttggaggattcaacgtcagaa 136  Q
    ||||| ||||| ||||| ||||||||| | ||| | | |||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| || ||||    
T  1366982 tattatagaaaataaatattactcaca-caactaaaacatattctgcaactaatttacattttcatgctatg-aattagttggagggttcaatgttagaa 1366885  T
Q  137 aaacctgtagcggaatctttgtccaccacttcagcaacagaaaatgagccacctgtaccggtcattgatcataaacaaaaggcatttcctctattttgct 236  Q
     ||||||||||   |||||||||||||| ||||| |||||||||||      || ||   |||||||||||||||||||||| ||||||||| |||||||    
T  1366884 caacctgtagccacatctttgtccaccatttcaggaacagaaaatg------ctataaaagtcattgatcataaacaaaaggtatttcctcttttttgct 1366791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 37 - 164
Target Start/End: Complemental strand, 27390918 - 27390789
Alignment:
Q  37 tattaaagaaattaaattttactc--acaactacttagaaatattctgcaactaatttacattttcatgctatgcaatcagttggaggattcaacgtcag 134  Q
    ||||||||||| |||||||||||   |||||| ||||  ||||| |||||||||||||| ||||||||| |||||||| ||||||||| |||| ||||||    
T  27390918 tattaaagaaaataaattttactggaacaactgcttaataatatgctgcaactaatttaaattttcatgttatgcaattagttggagggttcaccgtcag 27390819  T
Q  135 aaaaacctgtagcggaatctttgtccacca 164  Q
    ||| || |||||| ||||||||||||||||    
T  27390818 aaagacttgtagcagaatctttgtccacca 27390789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 18025252 - 18025164
Alignment:
Q  174 cagaaaatgagccacctgtaccggtcattgatcataaacaaaaggcatttcctctattttgctcatatttattctgacacttttccaat 262  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||   ||||| |||||||||||    
T  18025252 cagaaaatgagccacatgtaccagtcattgatcataaacaaaaggcatttcctctattttgctcgtattctctctgaaacttttccaat 18025164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 28005121 - 28005227
Alignment:
Q  80 ctgcaactaatttacattttcatgctatgcaatcagttggaggattcaacgtcagaaaaacctgtagcggaatctttgtccaccacttcagcaacagaaa 179  Q
    ||||||||||||||||||||||||||||||||| |||||||||  || || |||||||||   ||||  ||| |||||||||||| ||||| |||| |||    
T  28005121 ctgcaactaatttacattttcatgctatgcaattagttggagggctctacatcagaaaaattagtaggtgaaactttgtccaccatttcaggaacaaaaa 28005220  T
Q  180 atgagcc 186  Q
    |||||||    
T  28005221 atgagcc 28005227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 27459681 - 27459606
Alignment:
Q  64 actacttagaaatattctgcaactaatttacattttcatgctatgcaatcagttggaggattcaacgtcagaaaaa 139  Q
    |||||||| |||||   ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||    
T  27459681 actacttaaaaataagttgcaactaatttacattttcatgttatgcaagcagttggagggttcaacgtcagaaaaa 27459606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 18025323 - 18025265
Alignment:
Q  61 acaactacttagaaatattctgcaactaatttacattttcatgctatgcaatcagttgg 119  Q
    ||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||    
T  18025323 acaactacttaaaactatgctgcaactaatttacattttcatgctatgcaatcagttgg 18025265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 319
Target Start/End: Complemental strand, 27390783 - 27390664
Alignment:
Q  197 gtcattgatcataaacaaaaggcatttcctctattttgctcatatttattctgacacttttccaatacaggaattgaattatatatactgcaaactgaaa 296  Q
    |||||||||  ||||||||||||||||||||||||||||   ||||| |||||| |||||| |||| |||||||| |||    |||||| ||| || |||    
T  27390783 gtcattgatagtaaacaaaaggcatttcctctattttgcctgtattttttctgaaactttttcaatgcaggaattaaat----tatactacaatcttaaa 27390688  T
Q  297 catcc-tttaattttaagcagggt 319  Q
    ||||| ||||||||||||||||||    
T  27390687 catccttttaattttaagcagggt 27390664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 81 - 175
Target Start/End: Original strand, 28003473 - 28003567
Alignment:
Q  81 tgcaactaatttacattttcatgctatgcaatcagttggaggattcaacgtcagaaaaacctgtagcggaatctttgtccaccacttcagcaaca 175  Q
    ||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||  ||||||   | |||||||||||| ||||| ||||    
T  28003473 tgcaagtaatttacattttcatgttatgcaatcagttggagggttcaacatcagaaaaaaatgtagcatcaactttgtccaccatttcagaaaca 28003567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 81 - 139
Target Start/End: Original strand, 28036716 - 28036774
Alignment:
Q  81 tgcaactaatttacattttcatgctatgcaatcagttggaggattcaacgtcagaaaaa 139  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||    
T  28036716 tgcaactaatttacattttcatgttatgcaatcagttggagggttcaacatcagaaaaa 28036774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 27919627 - 27919683
Alignment:
Q  81 tgcaactaatttacattttcatgctatgcaatcagttggaggattcaacgtcagaaa 137  Q
    |||||||||||||||||||| || |||||||||||||||||| ||||||||||||||    
T  27919627 tgcaactaatttacattttcttgttatgcaatcagttggagggttcaacgtcagaaa 27919683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 27979755 - 27979811
Alignment:
Q  81 tgcaactaatttacattttcatgctatgcaatcagttggaggattcaacgtcagaaa 137  Q
    |||||||||||||||||||| || |||||||||||||||||| ||||||||||||||    
T  27979755 tgcaactaatttacattttcttgttatgcaatcagttggagggttcaacgtcagaaa 27979811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 26236043 - 26235972
Alignment:
Q  66 tacttagaaatattctgcaactaatttacattttcatgctatgcaatcagttggaggattcaacgtcagaaa 137  Q
    |||||| |||||| ||||||||||||||||||||||||| ||||||| ||||||||| ||| || |||||||    
T  26236043 tacttataaatatgctgcaactaatttacattttcatgcaatgcaattagttggagggttctacatcagaaa 26235972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 356
Target Start/End: Original strand, 27979930 - 27980033
Alignment:
Q  250 acacttttccaatacaggaattgaattatatatactgcaaactgaaacatccttt-aattttaagcagggtgtcgagataactgttgaagaagtaactgc 348  Q
    |||||||| |||| |||||||||| |||||    || ||| || ||||||||||| ||||||||||||||| ||||||||| ||||||||||| |||| |    
T  27979930 acactttttcaatgcaggaattgagttata----ctacaatctcaaacatccttttaattttaagcagggtatcgagataagtgttgaagaaggaactac 27980025  T
Q  349 attaactc 356  Q
    ||||||||    
T  27980026 attaactc 27980033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 191
Target Start/End: Complemental strand, 26179612 - 26179487
Alignment:
Q  66 tacttagaaatattctgcaactaatttacattttcatgctatgcaatcagttggaggattcaacgtcagaaaaacctgtagcggaatctttgtccaccac 165  Q
    |||||| |||||| |||||||||| |||||||||||||| ||||||| ||||||||| ||| || ||||||| | | | ||| | | || |||||||||     
T  26179612 tacttaaaaatatgctgcaactaacttacattttcatgcaatgcaattagttggagggttctacatcagaaataacagcagcagcaactgtgtccaccat 26179513  T
Q  166 ttcagcaacagaaaatgagccacctg 191  Q
    | ||| |||||| ||| |||||||||    
T  26179512 tacagaaacagacaataagccacctg 26179487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 26128260 - 26128187
Alignment:
Q  64 actacttagaaatattctgcaactaatttacattttcatgctatgcaatcagttggaggattcaacgtcagaaa 137  Q
    |||||||  ||||||  |||||||||||||||||||||||||||||||| |||| |||| ||| || |||||||    
T  26128260 actacttgaaaatataatgcaactaatttacattttcatgctatgcaattagttagagggttctacatcagaaa 26128187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 26178310 - 26178237
Alignment:
Q  64 actacttagaaatattctgcaactaatttacattttcatgctatgcaatcagttggaggattcaacgtcagaaa 137  Q
    |||||||  ||||||  |||||||||||||||||||||||||||||||| |||| |||| ||| || |||||||    
T  26178310 actacttgaaaatataatgcaactaatttacattttcatgctatgcaattagttagagggttctacatcagaaa 26178237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 26202147 - 26202074
Alignment:
Q  64 actacttagaaatattctgcaactaatttacattttcatgctatgcaatcagttggaggattcaacgtcagaaa 137  Q
    |||||||  ||||||  |||||||||||||||||||||||||||||| |||| |||||| ||| || |||||||    
T  26202147 actacttgaaaatataatgcaactaatttacattttcatgctatgcattcagctggagggttctacatcagaaa 26202074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 26628943 - 26629035
Alignment:
Q  83 caactaatttacattttcatgctatgcaatcagttggaggattcaacgtcagaaaaacctgtagcggaatctttgtccaccacttcagcaaca 175  Q
    ||||||||||| ||||||||||  || ||||||||||||| |||||||||||| ||| | ||||    | |||||||||||||||||| ||||    
T  26628943 caactaatttatattttcatgccgtggaatcagttggagggttcaacgtcagagaaaacggtagaaacaactttgtccaccacttcaggaaca 26629035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 353
Target Start/End: Complemental strand, 18025118 - 18025067
Alignment:
Q  302 tttaattttaagcagggtgtcgagataactgttgaagaagtaactgcattaa 353  Q
    |||||||||||||||||| |||||||||||| |||||||| |||| ||||||    
T  18025118 tttaattttaagcagggtatcgagataactgctgaagaaggaactacattaa 18025067  T

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Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 120
Target Start/End: Original strand, 28151215 - 28151254
Alignment:
Q  81 tgcaactaatttacattttcatgctatgcaatcagttgga 120  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  28151215 tgcaactaatttacattttcatgttatgcaatcagttgga 28151254  T

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Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 26129564 - 26129518
Alignment:
Q  64 actacttagaaatattctgcaactaatttacattttcatgctatgca 110  Q
    |||||||| |||||| |||||||||| ||||||||||||||||||||    
T  26129564 actacttaaaaatatgctgcaactaaattacattttcatgctatgca 26129518  T

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Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 341
Target Start/End: Original strand, 26630753 - 26630884
Alignment:
Q  208 taaacaaaaggcatttcctctattttgctcatatt-tattctgacacttttccaatacaggaattgaattatatatactgcaaactgaaacatcctt-ta 305  Q
    |||||||||||||||||| ||||||||||  |||| | || |||| |||||  ||| |||||||||||||||||    | |||||  ||  |||||| ||    
T  26630753 taaacaaaaggcatttcccctattttgcttgtattcttttttgactcttttttaatgcaggaattgaattatat----tacaaacctaagtatccttata 26630848  T
Q  306 attttaagcagggtgtcgagataactgttgaagaag 341  Q
    |||||||||||| | ||||||||| |||||||||||    
T  26630849 attttaagcaggttatcgagataagtgttgaagaag 26630884  T

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Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 28084320 - 28084390
Alignment:
Q  68 cttagaaatattctgcaactaatttacattttcatgctatgcaatcagttggaggattcaacgtcagaaaa 138  Q
    |||| |||||| || ||| | ||||||||||||||||||| |||| ||||||| | |||||||||||||||    
T  28084320 cttacaaatatactacaattcatttacattttcatgctatacaattagttggaaggttcaacgtcagaaaa 28084390  T

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Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 8539873 - 8539820
Alignment:
Q  82 gcaactaatttacattttcatgctatgcaatcagttggaggattcaacgtcaga 135  Q
    |||||||||||||||||||||  |||||||||||||||||| ||| || |||||    
T  8539873 gcaactaatttacattttcattttatgcaatcagttggagggttctacatcaga 8539820  T

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Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 19476150 - 19476202
Alignment:
Q  83 caactaatttacattttcatgctatgcaatcagttggaggattcaacgtcaga 135  Q
    |||||||||||||||||| ||||||| ||| ||||||||| ||| ||||||||    
T  19476150 caactaatttacattttcttgctatggaattagttggagggttctacgtcaga 19476202  T

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Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 355
Target Start/End: Original strand, 28005296 - 28005393
Alignment:
Q  255 tttccaatacaggaattgaattatatatactgcaaactgaaacatcctt-taattttaagcagggtgtcgagataactgttgaagaagtaactgcattaa 353  Q
    ||||||||  |||||||||||||||    || ||| || |||||||||| |||||||||||||||| |||||| || ||||||||||| |||| ||| ||    
T  28005296 tttccaatgtaggaattgaattata----ctacaatctcaaacatccttctaattttaagcagggtatcgagaaaagtgttgaagaaggaactacatcaa 28005391  T

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Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 11420327 - 11420402
Alignment:
Q  64 actacttagaaatattctgcaactaatttacattttcatgctatgcaatcagttggaggattcaacgtcagaaaaa 139  Q
    |||||||| ||||||  ||||||||||||||||||||||  | |  |||||||| | || ||||||||||||||||    
T  11420327 actacttaaaaatatgttgcaactaatttacattttcatcatgttaaatcagttcgtgggttcaacgtcagaaaaa 11420402  T

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Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 352 - 387
Target Start/End: Original strand, 27348510 - 27348545
Alignment:
Q  352 aactcattcaaaattactcagttcatcttcacaggt 387  Q
    |||||||||||||| |||||||||||||||||||||    
T  27348510 aactcattcaaaatcactcagttcatcttcacaggt 27348545  T

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Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 352 - 387
Target Start/End: Original strand, 27377850 - 27377885
Alignment:
Q  352 aactcattcaaaattactcagttcatcttcacaggt 387  Q
    |||||||||||||| |||||||||||||||||||||    
T  27377850 aactcattcaaaatcactcagttcatcttcacaggt 27377885  T

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Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 26630609 - 26630667
Alignment:
Q  64 actacttagaaatattctgcaactaatttacattttcatgctatgcaatcagttggagg 122  Q
    |||||||| ||||||  |||||||||||||||||| |||| | |||||| |||||||||    
T  26630609 actacttaaaaatatcatgcaactaatttacatttccatggtttgcaattagttggagg 26630667  T

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Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 26140197 - 26140160
Alignment:
Q  73 aaatattctgcaactaatttacattttcatgctatgca 110  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  26140197 aaatatgctgcaactaaattacattttcatgctatgca 26140160  T

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Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 8539691 - 8539647
Alignment:
Q  302 tttaattttaagcagggtgtcgagataactgttgaagaagtaact 346  Q
    |||||||||||||||||||| || |||| ||||||||||| ||||    
T  8539691 tttaattttaagcagggtgttgaaataagtgttgaagaaggaact 8539647  T

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Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 355
Target Start/End: Original strand, 22392399 - 22392755
Alignment:
Q  8 tcattgtgaatttaaagctaaaagtcaattattaaagaaattaaattttactc---------acaactacttagaaatattctgcaactaatttacattt 98  Q
    |||||||| || | ||||||||| |||| ||||||||||| ||||||||||||         ||||||||||| ||||||||||||||||||||||||||    
T  22392399 tcattgtgcatattaagctaaaaatcaagtattaaagaaaataaattttactctaacaagtaacaactacttaaaaatattctgcaactaatttacattt 22392498  T
Q  99 tcatgctatgcaatcagttggaggattcaacgtcagaaaaacctgtagcggaatctttgtccaccacttcagcaacagaaaatgagccacctgtaccggt 198  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||| | |||| || || ||||||||||||||||||||||||| |||  ||    
T  22392499 tcatgctacgcaatcagttggagggttcaacgtcagaaaaacctgtagcggaaccgttgtgcatcatttcagcaacagaaaatgagccacctatacaagt 22392598  T
Q  199 cattgatcataaacaaaaggcatttcctctattttgctcatatttattctgacacttttccaatacaggaattgaattatatatactgcaaactgaaaca 298  Q
    ||||||||||||||||||||||||||||||||||| ||  |||| ||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||    
T  22392599 cattgatcataaacaaaaggcatttcctctatttttcttgtattcattctgacacttttccaatgcaggaattgtattatatatactacaaactgaaaca 22392698  T
Q  299 tcctttaattttaagcagggtgtcgagataactgttgaagaagtaactgcattaact 355  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22392699 tcctttaagtttaagcagggtgtcgagataactgttgaagaagtaactgcattaact 22392755  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 22398709 - 22398761
Alignment:
Q  8 tcattgtgaatttaaagctaaaagtcaattattaaagaaattaaattttactc 60  Q
    |||||||| || | ||||||||| |||| ||||||||||| ||||||||||||    
T  22398709 tcattgtgcatattaagctaaaaatcaagtattaaagaaaataaattttactc 22398761  T

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Target: scaffold1142 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 1327 - 1402
Alignment:
Q  64 actacttagaaatattctgcaactaatttacattttcatgctatgcaatcagttggaggattcaacgtcagaaaaa 139  Q
    |||||||| |||||| |||||||||||||||||||| ||| |||||||| |||||||||  ||| | |||||||||    
T  1327 actacttaaaaatatgctgcaactaatttacatttttatggtatgcaattagttggagggctcagcatcagaaaaa 1402  T

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