View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_low_32 (Length: 389)
Name: NF15916_low_32
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 61 - 339
Target Start/End: Original strand, 9039254 - 9039532
Alignment:
| Q |
61 |
tatacactcttatatattgattagaattcgtgtggatctcatcataaaaatatattccaataaattatgtggatatcatatggatttcatgtcataatat |
160 |
Q |
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| T |
9039254 |
tatacactcttatatattgattagaattcgtgtggatctcatcataaaaatatattccaataaattatgtggatatgatatggatttcatgtcataa--- |
9039350 |
T |
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| Q |
161 |
aagaatttttattgg-aacaagagatcgaattgaagagagagtgagagagtatattacctatagctt----agtgataaggtattagtcttgtaatctta |
255 |
Q |
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| T |
9039351 |
--gaatttttattgggaacaagagatcgcattgaagagagagtgagagagtatattacctatagcttgcttagtgataaggtattagtcttgtaatctta |
9039448 |
T |
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| Q |
256 |
agagatagagttcaatttcctttgtagacgtttgtaaaataaccatttgtgtcacttattaataaataatgatttactatgttc |
339 |
Q |
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| T |
9039449 |
agagatatagttcaatctcctttgtagacgtttgtaaaataaccatttgtgtcacttattaataaataatgatttactatgttc |
9039532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 9039169 - 9039232
Alignment:
| Q |
1 |
tggtggcaatgagattgatgtggagtcatcgcttgagcagattaagctagtgtaaaatgttata |
64 |
Q |
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| T |
9039169 |
tggtggcaatgagattgatgtggagtcatcgcttgagcagattaagctagtgtaaaatgttata |
9039232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9048607 - 9048651
Alignment:
| Q |
1 |
tggtggcaatgagattgatgtggagtcatcgcttgagcagattaa |
45 |
Q |
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| T |
9048607 |
tggtggcaatgtgattgatgtggagtcatcacttgagcaaattaa |
9048651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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