View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_low_34 (Length: 388)
Name: NF15916_low_34
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 370
Target Start/End: Complemental strand, 9273697 - 9273338
Alignment:
| Q |
11 |
ataaacacatgaatatgagaatagtgattgtagtttaaaccactacggaatgaggaaagtaaaagaaaagaactaaagtggaacatgttttggactttct |
110 |
Q |
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| T |
9273697 |
ataaatacatgaatatgagaatagtgattgtagtttaaaccactacggaatgaggaaagtaaaagaaaagaactaaagtggaacatgttttggactttct |
9273598 |
T |
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| Q |
111 |
gggaaaaaattgaaaagccgtaatatgggagaaaaacataacatcttttccaatttaagtataaaacaaagcaatgtttaatgtaattgtttaattatta |
210 |
Q |
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| T |
9273597 |
gggaaaaaattgaaaagccgtaatatgtgagaaaaacagaacatcttttccaattgaagtataaaacaaagcaatgtttaatgtaattgtttaattatta |
9273498 |
T |
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| Q |
211 |
ttttgtttttgnnnnnnnnttgtcgtataattattcattggcgtcttaaggtataatccgtacaaggtgaatatcatcacggtggatcacactaaaaaag |
310 |
Q |
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| T |
9273497 |
ttttgtttttgaaaaaaaattgtcgtataattattgattggcctcttaaggtataatccgtacaaggtgaatatcatcacggtggatcacactaaaaaag |
9273398 |
T |
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| Q |
311 |
cacacaataaaatagtctacaagaatcctacacaagtaaacttgcaatataacactatat |
370 |
Q |
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| T |
9273397 |
cacacaataaaatagtctacaagaatcctacacaagtaaacttgcaatataacactatat |
9273338 |
T |
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