View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_low_35 (Length: 386)
Name: NF15916_low_35
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 23 - 370
Target Start/End: Complemental strand, 38400974 - 38400618
Alignment:
| Q |
23 |
ttagaaaaagttaaattgcatacaaagaatagattttgtttctaatttcatttcttacatatgtaacttcttcacacaaatgaagaagttaaattgtata |
122 |
Q |
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| T |
38400974 |
ttagaaaaagttaaattgcatacgaagaatagattttgtttctaatttcatttcttacatctgtaacttcttcacacaaatgatgaagttaaattgcata |
38400875 |
T |
|
| Q |
123 |
caaatagtaattttgctaaatttccattattaaagtaaatactcattccatttgcaggttgggttgattctgggtgtttcatttgagctaaaatcattgg |
222 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38400874 |
caaatagtaattttggtaaatttccattattaaacacaatactcattccatttgcaggttgggttgattctaggtgtttcatttgagctaaaatcattgg |
38400775 |
T |
|
| Q |
223 |
aagcatacatgggcaagttgtttccatatggaactcatgacgtaatttc---------atcattaggtatggtgatcttcgttttcataaacggtgtaca |
313 |
Q |
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| T |
38400774 |
aagcatacatgggcaagttgtttccatatggaactcatgacgtaatttcatcaatttcatcattaggtatggtgatcttcgttttcataaacggtgtaca |
38400675 |
T |
|
| Q |
314 |
aatggatttcagcttgataacgaggacaggaaagaaagcatggataatttcaataat |
370 |
Q |
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| T |
38400674 |
aatggatttcagcttgataacgaggacaggaaagaaagcatggataatttcaataat |
38400618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 160 - 370
Target Start/End: Complemental strand, 38392248 - 38392029
Alignment:
| Q |
160 |
aatactcattccatttgcaggttgggttgattctgggtgtttcatttgagctaaaatcattggaagcatacatgggcaagttgtttccatatggaactca |
259 |
Q |
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| T |
38392248 |
aatactcattccatttgcaggctgggttgattctaggtgtctcatttgagctaaaaccattagacacatacatgggcaagatatttccatatggaactca |
38392149 |
T |
|
| Q |
260 |
tgacgtaatttca---------tcattaggtatggtgatcttcgttttcataaacggtgtacaaatggatttcagcttgataacgaggacaggaaagaaa |
350 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
38392148 |
tgacgtaatttcaacaatttcatcattaggtatggtgatcttcgttttcattaacagtgtacaaatggatttcagcttgataacaaggacaggaaagaga |
38392049 |
T |
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| Q |
351 |
gcatggataatttcaataat |
370 |
Q |
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|||||||||||||||||||| |
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| T |
38392048 |
gcatggataatttcaataat |
38392029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 160 - 370
Target Start/End: Complemental strand, 38383390 - 38383171
Alignment:
| Q |
160 |
aatactcattccatttgcaggttgggttgattctgggtgtttcatttgagctaaaatcattggaagcatacatgggcaagttgtttccatatggaactca |
259 |
Q |
| |
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|||||||||| |||||| ||| |||||||||||| ||||| || |||||||||||| || |||| ||||||||| |||||| ||||||||||||||||| |
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| T |
38383390 |
aatactcatttcatttgtaggctgggttgattctaggtgtctcgtttgagctaaaaccaatggacacatacatggacaagttatttccatatggaactca |
38383291 |
T |
|
| Q |
260 |
tgacgtaatttcatca---------ttaggtatggtgatcttcgttttcataaacggtgtacaaatggatttcagcttgataacgaggacaggaaagaaa |
350 |
Q |
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|||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38383290 |
tgacgtaatttcatcaatttcatcattaggtatgatgttcttcgttttcataaacggtgtacaaatggatttcagcttgataacaaggacaggaaagaaa |
38383191 |
T |
|
| Q |
351 |
gcatggataatttcaataat |
370 |
Q |
| |
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|||||||||||||||||||| |
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| T |
38383190 |
gcatggataatttcaataat |
38383171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 38383543 - 38383449
Alignment:
| Q |
20 |
ttattagaaaaagttaaattgcatacaaagaatagattttgtttctaatttcatttcttacatatgtaacttcttcacacaaatgaagaagttaa |
114 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| |||||||||||||| |||| |||||||||| |
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| T |
38383543 |
ttataagaaaaagttaaattgcattcaaagaatatattttgtttctaatttcatttcttccataggtaacttcttcacataaatcaagaagttaa |
38383449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 38392401 - 38392333
Alignment:
| Q |
20 |
ttattagaaaaagttaaattgcatacaaagaatagattttgtttctaatttcatttcttacatatgtaa |
88 |
Q |
| |
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||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||| ||||| |
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| T |
38392401 |
ttattagaaaaagttaaattgcatataaaaaatagattttgtttctaatttcatttcttccatctgtaa |
38392333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 165 - 370
Target Start/End: Original strand, 37839252 - 37839466
Alignment:
| Q |
165 |
tcattccatttgcaggttgggttgattctgggtgtttcatttgagctaaaatcattggaagcatacatgggcaagttgtttccatatggaactcatgacg |
264 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| | ||||||||||||||| ||||||| |||||||| |||||| |||||||||||||||||||||| |
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| T |
37839252 |
tcattccatttgcaggctgggttgattctaggtatctcatttgagctaaaaccattggacacatacatgaacaagttttttccatatggaactcatgacg |
37839351 |
T |
|
| Q |
265 |
taatt---------tcatcattaggtatggtgatcttcgttttcataaacggtgtacaaatggatttcagcttgataacgaggacaggaaagaaagcatg |
355 |
Q |
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||||| ||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
37839352 |
taatttcaacaatttcatcattaggaatggtgctctttgttttcataaacggtgtacaaatggatttcagcttgataacaaggacaggaaagagagcatg |
37839451 |
T |
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| Q |
356 |
gataatttcaataat |
370 |
Q |
| |
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||||||||||||||| |
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| T |
37839452 |
gataatttcaataat |
37839466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 217 - 370
Target Start/End: Original strand, 37844915 - 37845068
Alignment:
| Q |
217 |
cattggaagcatacatgggcaagttgtttccatatggaactcatgacgtaatttcatcattaggtatggtgatcttcgttttcataaacggtgtacaaat |
316 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| | || ||||||||||| ||||||||||| |
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| T |
37844915 |
cattggacgcatacatgggcaagttgtttccatatggaactcatgaagtaatttcatcaataggtatggttctttttgttttcataaatggtgtacaaat |
37845014 |
T |
|
| Q |
317 |
ggatttcagcttgataacgaggacaggaaagaaagcatggataatttcaataat |
370 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |
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| T |
37845015 |
ggatttcagcttgataataaggacgggaaagagagcatggataatttcaataat |
37845068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 37838869 - 37838920
Alignment:
| Q |
27 |
aaaaagttaaattgcatacaaagaatagattttgtttctaatttcatttctt |
78 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37838869 |
aaaaagttaaattgcatacaaaaaatagattttgtttctaatttcatttctt |
37838920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 37844428 - 37844496
Alignment:
| Q |
20 |
ttattagaaaaagttaaattgcatacaaagaatagattttgtttctaatttcatttcttacatatgtaa |
88 |
Q |
| |
|
|||||||| |||||||||||||||| | | ||||||||||||||||||| ||||||||| ||| ||||| |
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| T |
37844428 |
ttattagataaagttaaattgcatatagaaaatagattttgtttctaatatcatttcttccatgtgtaa |
37844496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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