View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_low_36 (Length: 384)
Name: NF15916_low_36
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 347
Target Start/End: Original strand, 34866502 - 34866830
Alignment:
| Q |
19 |
actacccgatgctagacttaggccctcccaaaatacccaagttcctgtcaatattttacttatttacttgcattaataaataagccacctataaattgaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866502 |
actacccgatgctagacttaggccctcccaaaatacccaagttcctgtcaatattttacttatttacttgcattaataaataagccacctataaattgaa |
34866601 |
T |
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| Q |
119 |
ttaagggagtgtttggaagagcttatttacaacttatttgaatttacctgatgacataagcccttgtcgaagtgttcagaacatgacagaacttataaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866602 |
ttaagggagtgtttggaagagcttatttacaacttatttgaatttacctgatgacataagcccttgtcgaagtgttcagaacatgacagaacttataaaa |
34866701 |
T |
|
| Q |
219 |
atagcttataacatgtttaaaagctgtcttaaaatttggattggctctaactcaaccctacaaaatcagttagtaatgtgaaggatatccacccccttat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866702 |
atagcttataacatgtttaaaagctgtcttaaaatttggattggctctaactcaaccctacaaaatcagttagtaatgtgaaggatatccacccccttat |
34866801 |
T |
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| Q |
319 |
aagctctactctgaccatattaatatatt |
347 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34866802 |
aagctctactctgaccatattaatatatt |
34866830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 42 - 346
Target Start/End: Complemental strand, 51857530 - 51857227
Alignment:
| Q |
42 |
cctcccaaaatacccaagttcctgtcaatattttacttatttacttgcattaataaataagccacctataaattgaattaagggagtgtttggaagagct |
141 |
Q |
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||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| ||||||| | ||||||||||||||||||||| || |
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| T |
51857530 |
cctcccaaaatacccaagtccctgtcaatattttactcatctacttgcattaataaataagccacatataaatagtattaagggagtgtttggaagatct |
51857431 |
T |
|
| Q |
142 |
tatttacaacttatttgaatttacctgatgacataagcccttgtcgaagtgttcagaacatgacagaacttataaaaatagcttataacatgtttaaaag |
241 |
Q |
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|| | ||||||| |||||||||||||||||||| | |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51857430 |
tactaacaacttttttgaatttacctgatgacacatgcccctgtcgaagtgtttggaacatgacagaacttataaaaatagcttataacatgtttaaaag |
51857331 |
T |
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| Q |
242 |
ctgtcttaaaatttggattggctctaactcaaccctacaaaatcagttagtaatgtgaaggatatccacccccttataagctctactctgaccatattaa |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| ||| |||| ||||| ||||| || |||||||| |
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| T |
51857330 |
ctgtcttaaaatttggattggctctaactcaaccctacaaaatcaatttgtaaagtgaaggatatcgaccaccttctaagc-ctactttggccatattac |
51857232 |
T |
|
| Q |
342 |
tatat |
346 |
Q |
| |
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||||| |
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|
| T |
51857231 |
tatat |
51857227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 11171478 - 11171515
Alignment:
| Q |
127 |
gtgtttggaagagcttatttacaacttatttgaattta |
164 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||| |
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| T |
11171478 |
gtgtttggaagagtttatttacaacttatttgaattta |
11171515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 37579900 - 37579956
Alignment:
| Q |
251 |
aatttggattggctctaactcaaccctacaaaatcagttagtaatgtgaaggatatc |
307 |
Q |
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||||| |||| | |||||||||||||||||||||||| | |||| ||||| |||||| |
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| T |
37579900 |
aatttagatttggtctaactcaaccctacaaaatcagcttgtaaggtgaaagatatc |
37579956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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