View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_low_39 (Length: 342)
Name: NF15916_low_39
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_low_39 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 8e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 175 - 342
Target Start/End: Original strand, 35387051 - 35387218
Alignment:
| Q |
175 |
ctatttagcataactattttatctttcaactataatacatattatgttaaccaatccaattttattacttcttatcatcacctcactcattgtcaatttg |
274 |
Q |
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| T |
35387051 |
ctatttagcataactattttatctttcaactataatacatattatcttaaccaatccaattttattacttcttatcatcacctcactcattgtcaatttg |
35387150 |
T |
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| Q |
275 |
aatggttactgataaaaaactcctctcacaaaattttctttaatagtacaataaaaacacacgttttc |
342 |
Q |
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| T |
35387151 |
aatggttactaataaaaaacttctctcacaaaattttctttaatagtacaataaaaacacacgttttc |
35387218 |
T |
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Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 35999259 - 35999344
Alignment:
| Q |
68 |
attgttgcttttaatatagaaattatgggtatttgaaaaaatcatataactaatatttgattctgaaattaaaaggaaaacaatat |
153 |
Q |
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| T |
35999259 |
attgttgtttttaatagagatattataggtatttgaaaaaatcatatagctaacatttgagtctgaaattaagaggaaaacaatat |
35999344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 167
Target Start/End: Original strand, 13443618 - 13443738
Alignment:
| Q |
49 |
ttattaatttgattccatgattgttgcttttaatatagaaattatgggtatttgaaaa--aatcatataactaatatttgattctgaaattaaaaggaaa |
146 |
Q |
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| T |
13443618 |
ttattaatttgtttccttaattattgtttataatataaagattatgagtatttgaaaaaaaatcatatagctcatatttgattcagaaattaagagaaaa |
13443717 |
T |
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| Q |
147 |
acaatataatgtggctgattt |
167 |
Q |
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| T |
13443718 |
acaatatcatgtggttgattt |
13443738 |
T |
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