View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_low_41 (Length: 308)
Name: NF15916_low_41
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 43582083 - 43582359
Alignment:
| Q |
18 |
actactggggcagctaccgagactgtggacgggatcgtggataaaattaaagtgctctcatggaggtggtttctagggagacatgaaaatactccatgta |
117 |
Q |
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| T |
43582083 |
actactggggcagctaccgagactgtggacgggatcgttgataaaattaaagtgctctcatggaggtggtttctagggagacatgaaaatactccatgta |
43582182 |
T |
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| Q |
118 |
tgttttaggagtggtcgtgggacccgattggctgcttggagaggtatcggatctgctgggaattatcatgtgcaggcatgatttttctttcgtagagtct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43582183 |
tgttttaggagtggtcgtgggacccgattggctgcttggagaggtatcggatctgctgggaattatcatgtgcaggcacgatttttctttcgtagagtct |
43582282 |
T |
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| Q |
218 |
gtcattttctggttttaagtctattgtggttatttgtaaatttcatttttgtcaagtattcaatatgcttttagata |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43582283 |
gtcattttctggttttaagtctattgtggttatttgtaaatttcatttttgtcaagtattcaatatgcttttagata |
43582359 |
T |
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