View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_low_44 (Length: 289)
Name: NF15916_low_44
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 32863238 - 32863007
Alignment:
| Q |
18 |
tgatgctcaaacttatgttgtagatcgagcaaaatccatgcttcaagaatggctagttgcctgtttgatgtgcagaacatcagttttccgcccgaagcaa |
117 |
Q |
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| T |
32863238 |
tgatgctcaaacttatgttgtagatcgagcaaaatccatgcttcaagaatggctagttgcctgtttgatgcgcagaacatcaatttcccgctcgaagcaa |
32863139 |
T |
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| Q |
118 |
gtaggtaatgcgaagtggacaaagtcatctaccggaatattcaagtgcaatatcgaagcttcttttttaaaacaaactagtagagttggaataagagtat |
217 |
Q |
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| T |
32863138 |
gtaggtaatgcgaagtggacaaagtcatctaccggaatattcaagtgcaatatcgaaggttcttttttcaaacaaacaaatagagttggaataagagtat |
32863039 |
T |
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| Q |
218 |
gcataatagatgctacaatcacttttgttttg |
249 |
Q |
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| T |
32863038 |
gtataatagatgctacaatcacttttgttttg |
32863007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 39220532 - 39220762
Alignment:
| Q |
18 |
tgatgctcaaacttatgttgtagatcgagcaaaatccatgcttcaagaatggctagttgcctgtttgatgtgcagaacatcagttttccgcccgaagcaa |
117 |
Q |
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|||| ||||||||| ||||||||| | ||||||| ||||||||||||||||||||| |||| |||||||| ||| || ||| ||| || ||| |||||| |
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| T |
39220532 |
tgatcctcaaacttttgttgtagaccaagcaaaaaccatgcttcaagaatggctagctgcccgtttgatgcgcaacacgtcaatttccctcccaaagcaa |
39220631 |
T |
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| Q |
118 |
gtaggtaatgcgaagtggacaaagtcatctaccggaatattcaagtgcaatatcgaagcttcttttttaaaacaaactagtagagttggaataagagtat |
217 |
Q |
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| T |
39220632 |
gtaggtaatgcgaagtggacaaagtcatctataggaggatttaagtgcaatattgatgcttctttttccaaacaaaccaatagagttggaataggagtat |
39220731 |
T |
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| Q |
218 |
gcataatagatgctacaatcacttttgtttt |
248 |
Q |
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||||||| |||| |||| |||||||||||| |
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| T |
39220732 |
gcataatggatgatacatgcacttttgtttt |
39220762 |
T |
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