View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_low_45 (Length: 266)
Name: NF15916_low_45
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 44149096 - 44148856
Alignment:
| Q |
12 |
gagatgaacaagaagataagctacgatcagttgcatttggatttcggtcaatctgatttcctcttacgcccgtgttctatttgcggtgttc-----actc |
106 |
Q |
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| T |
44149096 |
gagaagaacaagaagataagctacgatcagttgcatttggatttcgttcaatctgatttcctcttacgcccgtgttctatttgcggtgttcggttcactc |
44148997 |
T |
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| Q |
107 |
ctggaaatgtagaagacgagaaattgcacgcgcagtttcacaaacgttttacacaaggaatccaatttagggtatctaatttaattttccactttcataa |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44148996 |
ctggaaatgtagaagacgagaaattgcacgcgcagtttcacaaacgttttacacaaggaatccaatttagggtatctcatttaattttccactttcataa |
44148897 |
T |
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| Q |
207 |
tctccattatttgattcctatgttttgtttttgaataaact |
247 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |
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| T |
44148896 |
tctccattatttgattcctacgttttgtttttgaataaact |
44148856 |
T |
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