View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_low_46 (Length: 263)
Name: NF15916_low_46
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 27721426 - 27721526
Alignment:
| Q |
12 |
atgaattaaaaataaaaagtcggggcgagctgacataccagtcaagcatcttttgcaaagtaacagcttgtcccagctgagagaatatcaaacaaggtag |
111 |
Q |
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| T |
27721426 |
atgaattaaaaataaaaagtcggggcgagctgacataccagtcaagcatcttttgcaaagtaacagcttgtcccagctgagagaatatcaaacaaggtag |
27721525 |
T |
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| Q |
112 |
c |
112 |
Q |
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| T |
27721526 |
c |
27721526 |
T |
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Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 27721561 - 27721662
Alignment:
| Q |
147 |
cagaatcaataagtgaatgagaaatcaaacatgatccacatataacatacacatacataccccattcaaaagccttctaccagaagcaggtaagatatta |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27721561 |
cagaatcaataagtgaatgagaaatcaaacatgatccacatataacatacacatacataccccattcaaaagccttctaccagaagcaggcaagatatta |
27721660 |
T |
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| Q |
247 |
ac |
248 |
Q |
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|| |
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| T |
27721661 |
ac |
27721662 |
T |
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