View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15916_low_48 (Length: 254)

Name: NF15916_low_48
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15916_low_48
NF15916_low_48
[»] chr2 (1 HSPs)
chr2 (20-243)||(35918755-35918979)
[»] chr7 (2 HSPs)
chr7 (149-243)||(21270197-21270292)
chr7 (150-243)||(48189075-48189169)
[»] chr3 (2 HSPs)
chr3 (149-203)||(28726009-28726063)
chr3 (149-200)||(8377270-8377322)
[»] chr1 (3 HSPs)
chr1 (149-217)||(33885865-33885934)
chr1 (149-217)||(33958318-33958387)
chr1 (149-200)||(22362497-22362549)
[»] chr4 (1 HSPs)
chr4 (149-216)||(11993164-11993232)
[»] chr8 (2 HSPs)
chr8 (149-200)||(7094479-7094531)
chr8 (149-200)||(7098212-7098264)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 35918979 - 35918755
Alignment:
Q  20 gagggtgcccttttcttttcttggaagaagtttctgccttgttcttatcatcctcctccatattttggccacaagaacaagaagaataaattttgatttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35918979 gagggtgcccttttcttttcttggaagaagtttctgccttgttcttatcatcctcctccatattttggccacaagaacaagaagaataaattttgatttt 35918880  T
Q  120 ctgtaattaatgtcaagaaacactgtggaagtggcactatgcttaaggagtggaaagtgaaactaaccatgtaactaggaaggaagttgca-ttgtttct 218  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35918879 ctgtaattaatgtcaagaaacactatggaagtggcactatgcttaaggagtggaaagtgaaactaaccatgtaactaggaaggaagttgcatttgtttct 35918780  T
Q  219 tttcaattgcatgtccccatttctt 243  Q
    |||||||||||||||||||||||||    
T  35918779 tttcaattgcatgtccccatttctt 35918755  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 21270197 - 21270292
Alignment:
Q  149 agtggcactatgcttaaggagtggaaagtgaaactaaccatgtaactagg-aaggaagttgcattgtttcttttcaattgcatgtccccatttctt 243  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||| ||||| ||| | ||||||  ||| || | ||||||||||||||||    
T  21270197 agtggcactatgcttaagaagtggaaagtgaaactgaccatgtaactaggaaaggaggttaccttgttttcttttaaatacatgtccccatttctt 21270292  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 48189075 - 48189169
Alignment:
Q  150 gtggcactatgcttaaggagtggaaagtgaaactaaccatgtaactagg-aaggaagttgcattgtttcttttcaattgcatgtccccatttctt 243  Q
    ||||||||||||||||| |||||||||||||| | |||||||||||||| ||||| ||| ||||||||  ||| || | ||||||||||||||||    
T  48189075 gtggcactatgcttaagaagtggaaagtgaaattgaccatgtaactaggaaaggaggttacattgttttcttttaaatacatgtccccatttctt 48189169  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 28726063 - 28726009
Alignment:
Q  149 agtggcactatgcttaaggagtggaaagtgaaactaaccatgtaactaggaagga 203  Q
    |||||||||||||||||||||||||||  |||||| ||||| ||||||| |||||    
T  28726063 agtggcactatgcttaaggagtggaaaaagaaactcaccatttaactagaaagga 28726009  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 8377322 - 8377270
Alignment:
Q  149 agtggcactatgcttaaggagtggaaagtgaaactaacc-atgtaactaggaa 200  Q
    |||||||||||||||||||||||  |||||||| | ||| |||||||||||||    
T  8377322 agtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaa 8377270  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 33885934 - 33885865
Alignment:
Q  149 agtggcactatgcttaaggagtggaaagtgaaactaaccatgtaactagg-aaggaagttgcattgtttc 217  Q
    |||||||||||||||||||||||  |||||||| |  ||||||||||||| ||||| ||| |||||||||    
T  33885934 agtggcactatgcttaaggagtgtgaagtgaaattggccatgtaactaggaaaggaggttacattgtttc 33885865  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 33958318 - 33958387
Alignment:
Q  149 agtggcactatgcttaaggagtggaaagtgaaactaaccatgtaactagg-aaggaagttgcattgtttc 217  Q
    |||||||||||||||||||||||  |||||||| |  ||||||||||||| ||||| ||| |||||||||    
T  33958318 agtggcactatgcttaaggagtgtgaagtgaaattggccatgtaactaggaaaggaggttacattgtttc 33958387  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 22362549 - 22362497
Alignment:
Q  149 agtggcactatgcttaaggagtggaaagtgaaactaacc-atgtaactaggaa 200  Q
    |||||||||||||||||||||||  |||||||| | ||| |||||||||||||    
T  22362549 agtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaa 22362497  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 11993164 - 11993232
Alignment:
Q  149 agtggcactatgcttaaggagtggaaagtgaaactaaccatgtaactagg-aaggaagttgcattgttt 216  Q
    |||||||||| ||||||||||||  |||||||| | |||||||||||||| ||||| ||| ||||||||    
T  11993164 agtggcactaggcttaaggagtgtgaagtgaaattgaccatgtaactaggaaaggaggttacattgttt 11993232  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 7094479 - 7094531
Alignment:
Q  149 agtggcactatgcttaaggagtggaaagtgaaactaacc-atgtaactaggaa 200  Q
    |||||||||||||||||||||||  |||||||| | ||| |||||||||||||    
T  7094479 agtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaa 7094531  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 7098212 - 7098264
Alignment:
Q  149 agtggcactatgcttaaggagtggaaagtgaaactaacc-atgtaactaggaa 200  Q
    |||||||||||||||||||||||  |||||||| | ||| |||||||||||||    
T  7098212 agtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaa 7098264  T

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