View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15916_low_49 (Length: 252)

Name: NF15916_low_49
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15916_low_49
NF15916_low_49
[»] chr5 (14 HSPs)
chr5 (23-236)||(8547729-8547942)
chr5 (32-142)||(8644488-8644598)
chr5 (108-215)||(8529292-8529403)
chr5 (108-215)||(1599940-1600051)
chr5 (32-142)||(8637143-8637253)
chr5 (108-213)||(2874139-2874248)
chr5 (110-215)||(8535858-8535967)
chr5 (32-212)||(9074369-9074553)
chr5 (108-213)||(2856529-2856638)
chr5 (111-215)||(8641738-8641846)
chr5 (157-215)||(2904643-2904705)
chr5 (32-82)||(2904783-2904833)
chr5 (32-86)||(8678090-8678144)
chr5 (158-215)||(8644623-8644684)
[»] chr6 (1 HSPs)
chr6 (33-218)||(16716647-16716836)
[»] scaffold0627 (1 HSPs)
scaffold0627 (33-218)||(4948-5135)
[»] chr4 (1 HSPs)
chr4 (32-215)||(9443377-9443564)
[»] chr7 (1 HSPs)
chr7 (32-215)||(48361492-48361679)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 23 - 236
Target Start/End: Complemental strand, 8547942 - 8547729
Alignment:
Q  23 cacagatgaaggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547942 cacagatgaaggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgca 8547843  T
Q  123 cgattcacacaagtgggatacataagataagaagaagaaatttgaggatccacttatttctccatgttggtgttccgagtgtgtgtatctcaacaattac 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547842 cgattcacacaagtgggatacataagataagaagaagaaatttgaggatccacttatttctccatgttggtgttccgagtgtgtgtatctcaacaattac 8547743  T
Q  223 cacacgctcaatct 236  Q
    ||||||||||||||    
T  8547742 cacacgctcaatct 8547729  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 8644488 - 8644598
Alignment:
Q  32 aggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcaca 131  Q
    |||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| | |    |||| ||||| |||||||||||| |||| ||| |||    
T  8644488 aggagaaggaaatgattgcaacctctcactttcaaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccattaaca 8644587  T
Q  132 caagtgggata 142  Q
     ||||||||||    
T  8644588 taagtgggata 8644598  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 215
Target Start/End: Original strand, 8529292 - 8529403
Alignment:
Q  108 atccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtg 203  Q
    |||||||||||||||| ||||||||||||||||||| | |||   ||| |||||||||||||||||||||    ||||||||| | || |||||| ||||    
T  8529292 atccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtg 8529391  T
Q  204 tgtgtatctcaa 215  Q
    ||| ||||||||    
T  8529392 tgtttatctcaa 8529403  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 215
Target Start/End: Complemental strand, 1600051 - 1599940
Alignment:
Q  108 atccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtg 203  Q
    |||||||||||||||| ||||||||||||||||| | ||||     || |||||||||||||||||||||    ||||||||| | ||||||||| ||||    
T  1600051 atccaatgaagtgcaccattcacacaagtgggattcttaagcatccaaaaagaaatttgaggatccacttcaacatttctccaggatggtgttccaagtg 1599952  T
Q  204 tgtgtatctcaa 215  Q
    ||| ||||||||    
T  1599951 tgtttatctcaa 1599940  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 8637143 - 8637253
Alignment:
Q  32 aggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcaca 131  Q
    |||||||||||||||||| ||||||||  |||| ||||| |||||||||||||||| | |     ||||||||| |||||||||||  | || |||||||    
T  8637143 aggagaaggaaatgattgcaacctctcattttctaaacagaaacacaatatagacctttcttgacccttaaatctgatccaatgaatcgtaccattcaca 8637242  T
Q  132 caagtgggata 142  Q
    |||||||||||    
T  8637243 caagtgggata 8637253  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 2874248 - 2874139
Alignment:
Q  108 atccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtg 203  Q
    |||||||||||||| | ||||||||| || |||| || ||| |   || |||||||||||||||||||||    ||||||||||| |||||||||||| |    
T  2874248 atccaatgaagtgcgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatgatggtgttccgagcg 2874149  T
Q  204 tgtgtatctc 213  Q
    ||||||||||    
T  2874148 tgtgtatctc 2874139  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 215
Target Start/End: Original strand, 8535858 - 8535967
Alignment:
Q  110 ccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtg 205  Q
    |||||| ||||||| ||||||||||||||||||| | |||   ||| |||||||||||||||||||||    ||||||||| | ||| ||||| ||||||    
T  8535858 ccaatgtagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatggggttccaagtgtg 8535957  T
Q  206 tgtatctcaa 215  Q
    | ||||||||    
T  8535958 tttatctcaa 8535967  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 212
Target Start/End: Complemental strand, 9074553 - 9074369
Alignment:
Q  32 aggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcaca 131  Q
    ||||||||||||||| || |||||||| ||||||||||| ||| ||||||| |||| |  |   |  | | |||  |||||||||||||||| |||||||    
T  9074553 aggagaaggaaatgactgcaacctctcactttcaaaacagaaaaacaatattgacctttgctgattttcatatcttatccaatgaagtgcaccattcaca 9074454  T
Q  132 caagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtgtgtatct 212  Q
    ||||||||||||   |||    || |||||||||||||||||||||    ||||||| || ||| |||||| ||||||| |||||    
T  9074453 caagtgggatactcgagactcaaaaaagaaatttgaggatccacttcaacatttctcaatattgttgttccaagtgtgtttatct 9074369  T

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Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 2856638 - 2856529
Alignment:
Q  108 atccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtg 203  Q
    |||||||||||||| | ||||||||| || |||| || ||| |   || |||||||||||||||||||||    ||||||||||| || ||||||||| |    
T  2856638 atccaatgaagtgcgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatgatgatgttccgagcg 2856539  T
Q  204 tgtgtatctc 213  Q
    ||||||||||    
T  2856538 tgtgtatctc 2856529  T

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Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 8641738 - 8641846
Alignment:
Q  111 caatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtgt 206  Q
    ||||||||  ||| ||||||||||||||||||| |||||   |||  |||||| |||||||||||||    ||||||||||| ||||| ||| |||||||    
T  8641738 caatgaagaacactattcacacaagtgggatacttaagactcgaaatagaaatctgaggatccacttcaacatttctccatgatggtgctccaagtgtgt 8641837  T
Q  207 gtatctcaa 215  Q
     ||||||||    
T  8641838 ttatctcaa 8641846  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 2904705 - 2904643
Alignment:
Q  157 aagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtgtgtatctcaa 215  Q
    |||||||||||||||||||||    ||||||||||| || ||||||||| |||||||||||||    
T  2904705 aagaaatttgaggatccacttcaagatttctccatgatgttgttccgagcgtgtgtatctcaa 2904643  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 2904833 - 2904783
Alignment:
Q  32 aggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatat 82  Q
    |||||||||||||||||| | |||||| ||||||||||  |||||||||||    
T  2904833 aggagaaggaaatgattgcatcctctcactttcaaaactgaaacacaatat 2904783  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 8678090 - 8678144
Alignment:
Q  32 aggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagac 86  Q
    |||||||||||||||||| ||| ||||  |||| ||||| |||||||||||||||    
T  8678090 aggagaaggaaatgattgcaacttctcagtttctaaacagaaacacaatatagac 8678144  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 8644623 - 8644684
Alignment:
Q  158 agaaatttgaggatccactt----atttctccatgttggtgttccgagtgtgtgtatctcaa 215  Q
    ||||||||||||||| ||||    ||||||||||| ||||||||| ||||||| ||||||||    
T  8644623 agaaatttgaggatctacttcagcatttctccatgatggtgttccaagtgtgtttatctcaa 8644684  T

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Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 33 - 218
Target Start/End: Original strand, 16716647 - 16716836
Alignment:
Q  33 ggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcacac 132  Q
    |||||||||||||| || ||| |||| |||||||||||||||||||||||||||  | ||||| ||| ||||  || |||||||||||||| ||||||||    
T  16716647 ggagaaggaaatgaatgcaacttctcactttcaaaacaaaaacacaatatagacatttcccttccctcaaatgtgaaccaatgaagtgcaccattcacac 16716746  T
Q  133 aagtgggatacataagataagaagaagaaatttgaggatccac----ttatttctccatgttggtgttccgagtgtgtgtatctcaacaa 218  Q
    ||||||||| ||||||| | ||| | |||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||    
T  16716747 aagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttggtgttccgagtgtgtgtatctcaacaa 16716836  T

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Target: scaffold0627 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 33 - 218
Target Start/End: Original strand, 4948 - 5135
Alignment:
Q  33 ggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcacac 132  Q
    ||||| ||||||||||| |||||||| || |||||||||||||||||||  |||  | || || ||| ||||| ||||||||||||||||| ||||||||    
T  4948 ggagagggaaatgattgcaacctctcactgtcaaaacaaaaacacaata--gacgtttcctttccctcaaatctgatccaatgaagtgcaccattcacac 5045  T
Q  133 aagtgggatacataagataagaagaagaaatttgaggatccac----ttatttctccatgttggtgttccgagtgtgtgtatctcaacaa 218  Q
    ||||||||| ||||||| | ||| | |||||||||||||||||     ||||||||||||||| ||||||||||||||||||||| ||||    
T  5046 aagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttgatgttccgagtgtgtgtatctcgacaa 5135  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 215
Target Start/End: Original strand, 9443377 - 9443564
Alignment:
Q  32 aggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcaca 131  Q
    ||||||||||||||| || |||||||| |||||||| || |||  |||||| |||| |  |   |||| |||||  |||||||||||||||| |||||||    
T  9443377 aggagaaggaaatgactgcaacctctcactttcaaagcagaaaaccaatattgacctttgctcatcctcaaatcttatccaatgaagtgcaccattcaca 9443476  T
Q  132 caagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtgtgtatctcaa 215  Q
    |||||||||||| | |||   ||| |||||||||||||||||||||    ||||||||| | || |||||| ||||||| ||||||||    
T  9443477 caagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaa 9443564  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 215
Target Start/End: Complemental strand, 48361679 - 48361492
Alignment:
Q  32 aggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcaca 131  Q
    ||||||||||||||| || | |||||| ||||||||||| ||| ||||||| |||| |  |    ||| |||||  |||||||||||||||| |||||||    
T  48361679 aggagaaggaaatgactgcaccctctcactttcaaaacagaaaaacaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcaca 48361580  T
Q  132 caagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtgtgtatctcaa 215  Q
    ||||||||||||   |||   ||| ||||||| |||||||||||||    ||| ||||| | ||||||||| ||||||| ||||||||    
T  48361579 caagtgggatactcgagactcgaaaaagaaatgtgaggatccacttcaacattcctccaggatggtgttccaagtgtgtttatctcaa 48361492  T

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