View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15916_low_50 (Length: 252)

Name: NF15916_low_50
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15916_low_50
NF15916_low_50
[»] chr7 (2 HSPs)
chr7 (14-252)||(36775432-36775670)
chr7 (29-75)||(47536693-47536739)
[»] scaffold0157 (2 HSPs)
scaffold0157 (15-76)||(26429-26490)
scaffold0157 (205-245)||(26246-26286)
[»] chr4 (4 HSPs)
chr4 (15-76)||(12493987-12494048)
chr4 (15-72)||(21570249-21570306)
chr4 (27-75)||(44218869-44218917)
chr4 (205-245)||(12494191-12494231)
[»] chr2 (3 HSPs)
chr2 (33-113)||(33320990-33321070)
chr2 (15-75)||(370994-371054)
chr2 (181-251)||(33320830-33320900)
[»] chr1 (2 HSPs)
chr1 (33-113)||(41196374-41196454)
chr1 (181-251)||(41196214-41196284)
[»] chr5 (1 HSPs)
chr5 (27-75)||(42962250-42962298)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 36775432 - 36775670
Alignment:
Q  14 gatgaaacccacgaagcctggtttggaggaatctcaggaacagatccataagattaggatcaccctttcctccaagcatgtcaaaaatctcgagaagggt 113  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36775432 gatgaaacccaccaagcctggtttggaggaatctcaggaacagatccataagattaggatcaccctttcctccaagcatgtcaaaaatctcgagaagggt 36775531  T
Q  114 acgttctgttaatctttcctttatgtttatgttgctttcacaacaacactgacttttcgtttttgacttgtttttattagtttgtgccgatttggttcgt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  36775532 acgttctgttaatctttcctttatgtttatgttgctttcacaacaacactgactttttgtttttgacttgttgttattagtttgtgccgatttggttcgt 36775631  T
Q  214 ggtgctaaggataagcatcttagagtgaagggtcctgtt 252  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36775632 ggtgctaaggataagcatcttagagtgaagggtcctgtt 36775670  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 47536693 - 47536739
Alignment:
Q  29 gcctggtttggaggaatctcaggaacagatccataagattaggatca 75  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||    
T  47536693 gcctggtttgaaagaatctcaggaacagatccataagattaggatca 47536739  T

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Target: scaffold0157 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 26490 - 26429
Alignment:
Q  15 atgaaacccacgaagcctggtttggaggaatctcaggaacagatccataagattaggatcac 76  Q
    |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26490 atgaaaccaactaagcctggtttggaagaatctcaggaacagatccataagattaggatcac 26429  T

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Target: scaffold0157; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 26286 - 26246
Alignment:
Q  205 ttggttcgtggtgctaaggataagcatcttagagtgaaggg 245  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  26286 ttggttcgtggtgctaaggataagcatcttagggtgaaggg 26246  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 12493987 - 12494048
Alignment:
Q  15 atgaaacccacgaagcctggtttggaggaatctcaggaacagatccataagattaggatcac 76  Q
    |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12493987 atgaaaccaactaagcctggtttggaagaatctcaggaacagatccataagattaggatcac 12494048  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 21570249 - 21570306
Alignment:
Q  15 atgaaacccacgaagcctggtttggaggaatctcaggaacagatccataagattagga 72  Q
    ||||||||||  |||||||||||||| |||||||| ||||||||||||||||||||||    
T  21570249 atgaaacccattaagcctggtttggaagaatctcatgaacagatccataagattagga 21570306  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 44218869 - 44218917
Alignment:
Q  27 aagcctggtttggaggaatctcaggaacagatccataagattaggatca 75  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||    
T  44218869 aagcctggtttgaaagaatctcaggaacagatccataagattaggatca 44218917  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 12494191 - 12494231
Alignment:
Q  205 ttggttcgtggtgctaaggataagcatcttagagtgaaggg 245  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  12494191 ttggttcgtggtgctaaggataagcatcttagggtgaaggg 12494231  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 33321070 - 33320990
Alignment:
Q  33 ggtttggaggaatctcaggaacagatccataagattaggatcaccctttcctccaagcatgtcaaaaatctcgagaagggt 113  Q
    ||||||||||| |||||||| |||||||| |||||||||||||| || ||||| ||||| ||| |||||||||||||||||    
T  33321070 ggtttggaggagtctcaggagcagatccacaagattaggatcactctctcctctaagcacgtccaaaatctcgagaagggt 33320990  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 371054 - 370994
Alignment:
Q  15 atgaaacccacgaagcctggtttggaggaatctcaggaacagatccataagattaggatca 75  Q
    ||||||||||  |||||||||||| | ||||||||||||||||||||||||||||||||||    
T  371054 atgaaacccattaagcctggtttgaaagaatctcaggaacagatccataagattaggatca 370994  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 33320900 - 33320830
Alignment:
Q  181 ttgtttttattagtttgtgccgatttggttcgtggtgctaaggataagcatcttagagtgaagggtcctgt 251  Q
    ||||| || ||||||||||| || |||||||||||||||||||| ||||||||||| || ||||| |||||    
T  33320900 ttgttgttgttagtttgtgctgacttggttcgtggtgctaaggacaagcatcttagggtcaagggacctgt 33320830  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 41196454 - 41196374
Alignment:
Q  33 ggtttggaggaatctcaggaacagatccataagattaggatcaccctttcctccaagcatgtcaaaaatctcgagaagggt 113  Q
    ||||||||||| |||||||| |||||||| |||||||||||||| || ||||| ||||| ||| |||||||||||||||||    
T  41196454 ggtttggaggagtctcaggagcagatccacaagattaggatcactctctcctctaagcacgtccaaaatctcgagaagggt 41196374  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 41196284 - 41196214
Alignment:
Q  181 ttgtttttattagtttgtgccgatttggttcgtggtgctaaggataagcatcttagagtgaagggtcctgt 251  Q
    ||||| || ||||||||||| || |||||||||||||||||||| ||||||||||| || ||||| |||||    
T  41196284 ttgttgttgttagtttgtgctgacttggttcgtggtgctaaggacaagcatcttagggtcaagggacctgt 41196214  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 42962298 - 42962250
Alignment:
Q  27 aagcctggtttggaggaatctcaggaacagatccataagattaggatca 75  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||||    
T  42962298 aagcctggtttaaaagaatctcaggaacagatccataagattaggatca 42962250  T

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