View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_low_51 (Length: 250)
Name: NF15916_low_51
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 41905101 - 41905337
Alignment:
| Q |
1 |
cacattcatcaggtccttaaaattcaacgatgtgactgaatattctatgtactgttagtttgataccaatcatattgcattgagttcaacttttatactt |
100 |
Q |
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| T |
41905101 |
cacattcatcaggtccttaaaattcaacgatgtgactgaatattctatgtactgttagtttgataccaatcatattgcattgagttcaacttttatactt |
41905200 |
T |
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| Q |
101 |
tgaatcaaccatcctttgaaatttgctacttttaaaataaatcagccacctaacctacaaaagttaaatagaaactttctgtttccttagtaacatatct |
200 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41905201 |
tgaatcaatcatcttttgaaatttgctacttttaaaataaatcagccacctaacctacaaaagttaaatagaaactttctgtttccttagtaacatatct |
41905300 |
T |
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| Q |
201 |
gtcactatatatgtatgaccacatgacccaccttcctatgc |
241 |
Q |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
41905301 |
gtcac----tatgtatgaccacatgacccaccttcctatgc |
41905337 |
T |
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