View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15916_low_52 (Length: 238)

Name: NF15916_low_52
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15916_low_52
NF15916_low_52
[»] chr1 (2 HSPs)
chr1 (19-183)||(26042447-26042610)
chr1 (16-64)||(29224263-29224310)
[»] chr8 (1 HSPs)
chr8 (113-177)||(15560459-15560523)
[»] chr4 (1 HSPs)
chr4 (22-65)||(25156342-25156385)
[»] chr5 (2 HSPs)
chr5 (22-64)||(16924914-16924956)
chr5 (16-65)||(40383705-40383754)
[»] chr2 (1 HSPs)
chr2 (22-67)||(8386976-8387021)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 26042610 - 26042447
Alignment:
Q  19 ttactaacttagaacttaatgtttttaagttggtctaagttaacaacccnnnnnnnnnngctcttgcagcaatgaagttactttagcaaaaggagttaaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||| ||||||| ||  | | |||||||||||||||    
T  26042610 ttactaacttagaacttaatgtttttaagttggtctaagttaacaacccacaaaaaaa-gctcttgcaccaatgaaatttgtctcgcaaaaggagttaaa 26042512  T
Q  119 ctctcataaagtgacgaacttatgttcaaatttcaattgagagagatatccatatttaaatatga 183  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26042511 ctctcataaagtgacgaacttatgttcaaattttaattgagagagatatccatatttaaatatga 26042447  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 29224263 - 29224310
Alignment:
Q  16 cacttactaacttagaacttaatgtttttaagttggtctaagttaacaa 64  Q
    |||||||||||||||| ||| ||| ||||| ||||||||||||||||||    
T  29224263 cacttactaacttagaccttcatg-ttttaggttggtctaagttaacaa 29224310  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 15560459 - 15560523
Alignment:
Q  113 gttaaactctcataaagtgacgaacttatgttcaaatttcaattgagagagatatccatatttaa 177  Q
    |||||| |||||||| ||||| |||||| |||| |||| |||||||||||||| ||||| |||||    
T  15560459 gttaaattctcataatgtgacaaacttaggttcgaattacaattgagagagatgtccatgtttaa 15560523  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 25156342 - 25156385
Alignment:
Q  22 ctaacttagaacttaatgtttttaagttggtctaagttaacaac 65  Q
    |||||||||| |||||| ||||||||||||||||||||| ||||    
T  25156342 ctaacttagaccttaatatttttaagttggtctaagttagcaac 25156385  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 16924914 - 16924956
Alignment:
Q  22 ctaacttagaacttaatgtttttaagttggtctaagttaacaa 64  Q
    |||||||||| ||| ||||||||| ||||||||||||||||||    
T  16924914 ctaacttagacctttatgtttttaggttggtctaagttaacaa 16924956  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 40383754 - 40383705
Alignment:
Q  16 cacttactaacttagaacttaatgtttttaagttggtctaagttaacaac 65  Q
    ||||| |||||||||  ||||||||||||| |||||||||||||| ||||    
T  40383754 cacttgctaacttagtccttaatgtttttaggttggtctaagttagcaac 40383705  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 8387021 - 8386976
Alignment:
Q  22 ctaacttagaacttaatgtttttaagttggtctaagttaacaaccc 67  Q
    |||||||||| |||||| ||| ||||||||||||||||| ||||||    
T  8387021 ctaacttagaccttaatatttataagttggtctaagttagcaaccc 8386976  T

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