View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_low_54 (Length: 236)
Name: NF15916_low_54
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 34315646 - 34315447
Alignment:
| Q |
20 |
aataatatacaaccttttggaaattcaacctgtgacacatcacccctttatctccaagattttgaacagactctacagtgtattgttcttgattatctat |
119 |
Q |
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| T |
34315646 |
aataatatacaaccttttggaaattcaacctgtgacacatcacccctttatctccaagattttgtacagactctacagtgtattgttcttgattatctat |
34315547 |
T |
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| Q |
120 |
gaaggaacttgaaagtgcttgaatgttgtttccaagctttgaaatggcaaactcaattaatgatcccaaagatttagcacaatgcttctgttctcctatg |
219 |
Q |
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| T |
34315546 |
taaggaacttgaaagtgcttgaatgttgtttccaagctttgaaatggcaaactcaattaatgatcccaaagatttagcacaatgcttctgttctcctatg |
34315447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 34251241 - 34251060
Alignment:
| Q |
20 |
aataatatacaaccttttggaaattcaacctgtgacacatcacccctttatctccaagattttgaacagactctacagtgtattgttcttgattatctat |
119 |
Q |
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| T |
34251241 |
aataaaatacaaccttttgaaagttcaacctatgacacatcactgctttctctccaagattttgaactgactctattttgtattgttcatgtttatcaat |
34251142 |
T |
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| Q |
120 |
gaaggaacttgaaagtgcttgaatgttgtttccaagctttgaaatggcaaactcaattaatgatcccaaagatttagcacaa |
201 |
Q |
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| T |
34251141 |
gaaggaacttgaaagtgcttgaatattttttccaagcttagaaattgaaaatccgattaatgttcctaaggattttgcacaa |
34251060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 34241479 - 34241298
Alignment:
| Q |
20 |
aataatatacaaccttttggaaattcaacctgtgacacatcacccctttatctccaagattttgaacagactctacagtgtattgttcttgattatctat |
119 |
Q |
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||||| ||||||| ||||| || |||||||| ||||||||||| |||| |||||||||||||| || || |||| |||||||||| || ||||| || |
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| T |
34241479 |
aataaaatacaactttttgaaagttcaacctatgacacatcactgctttgtctccaagattttgcaccgattctattttgtattgttcatgtttatcaat |
34241380 |
T |
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| Q |
120 |
gaaggaacttgaaagtgcttgaatgttgtttccaagctttgaaatggcaaactcaattaatgatcccaaagatttagcacaa |
201 |
Q |
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||||||||||||||||| |||||| || |||||||| |||||||| ||||| ||||||||| ||| || ||||| |||||| |
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| T |
34241379 |
gaaggaacttgaaagtgattgaatattttttccaagttttgaaattgcaaatccaattaatgttcctaaggattttgcacaa |
34241298 |
T |
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