View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_low_58 (Length: 211)
Name: NF15916_low_58
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 19756889 - 19757076
Alignment:
| Q |
18 |
ttatttgctaccaagaattaaattcaatcattcaaaattacaatgtgtgaataattttgaaattataccaaattatagattaccttagagacggaagttg |
117 |
Q |
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| T |
19756889 |
ttatttgctaccaagaattaaagtcaatcattcaaaattacaatgtgtgaataattttgaaattataccaaattatagattaccttagagattgaagttg |
19756988 |
T |
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| Q |
118 |
aacaattgatgttgtatcatattcttcagcgaccctatttgcactcatagggcctacttgttcaaactgtgcatcctttgcttctcca |
205 |
Q |
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| T |
19756989 |
aacaattgatgttgtatcatattcttcagcgaccctatttgcactcatagggcctacttttccaaactttgcatccattgcttgtcca |
19757076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 24134753 - 24134937
Alignment:
| Q |
18 |
ttatttgctaccaagaattaaattcaatcattcaaaattacaatgtgtgaataattttgaaattataccaaattatagat-----------------tac |
100 |
Q |
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| T |
24134753 |
ttattttctaccaacaatcaaagtcaatcattcaaaaataccatgtgtaaataattttgaaattataccaagttatagataatatcaaacaaaattttac |
24134852 |
T |
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| Q |
101 |
cttagagacggaagttgaacaattgatgttgtatcatattcttcagcgaccctatttgcactcatagggcctacttgttcaaact |
185 |
Q |
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| T |
24134853 |
cttagagatggaagttgaacaattgatgttgtatcatattcttcattgaccctatttgcactcatagggcctacttgttcaaact |
24134937 |
T |
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