View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_low_6 (Length: 724)
Name: NF15916_low_6
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 663; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 11 - 708
Target Start/End: Original strand, 40944318 - 40945020
Alignment:
| Q |
11 |
caaagggcttttgacaaggatgtttagcaacaggccttgtgttgaatgcatatgcagtataatcagctcttctataccaattcagaaaagttcttgatgg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40944318 |
caaagggcttttgacaaggatgtttagcaacaggccttgtgttgaatgcatatgcagtataatcagctcttctataccaattcagaaaagttcttgatgg |
40944417 |
T |
|
| Q |
111 |
catttctagttctctcggtgacaaaactcctctcagaatttgaaccatgaatccccatgaaactgagattgaccaaaatctgtttttgtcatagcatatt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40944418 |
catttctagttctctcggtgacaaaactcctctcagaatttgaaccatgaatccccatgaaactgagattgaccaaaacctgtttttgtcatagcatatt |
40944517 |
T |
|
| Q |
211 |
gattgttgcatgatgctggatgagtcttggttgatggattccattaaatgttttatggattgtgctcttgacatacttgggaatattggttgtactacat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40944518 |
gattgttgcatgatgctggatgagtcttggttgatggattccattaaatgttttatggattgtgctcttgacatacttgggaatattggttgtactacat |
40944617 |
T |
|
| Q |
311 |
caaggtgatgtaatgacactagtggagccacagggtgtgcacctagaaggcctaatagatctccatacacatcatactgcaaaaagaaaactcgagataa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40944618 |
caaggtgatgtaatgacactagtggagccacagggtgtgcacctagaaggcctaatagatctccatacacatcatactgcaaaaagaaaactcgagataa |
40944717 |
T |
|
| Q |
411 |
ttaaaattttgccatttttaataaaatggtccaatttccaagattacctctgaatcataccacgggggctcatgagctcgaagatccgtcgtcggtaaac |
510 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
40944718 |
ttaaaattttgccatttttaataatatggtccaatttccaagattacctctgaatcataccacgggggctcatgagctcgaggatccgttgtcggtaaac |
40944817 |
T |
|
| Q |
511 |
tatgatccatatacaaaagtatgccatgcatacatgttcatatgatt-----tattatgaaaatattttcaatcaatgttatatatttgatcacattgtc |
605 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40944818 |
tatgatccatatacaaaagtatgccatgcatacatgttcatatgatttattatattatgaaaatattttcaatcaatgctatatatttgatcacattgtc |
40944917 |
T |
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| Q |
606 |
catcaaagaacactacgatcacataaaaaatgtctaataattttacctgatgaaatccagcttcctttgtgagtggcacacctaactcagccatacatgc |
705 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40944918 |
catcaaagaacactacgatcacataaaaaatgtctaataattttacctgatgaaatccagcttcctttgtgagtggcacacctaactcagccatacatgc |
40945017 |
T |
|
| Q |
706 |
ttg |
708 |
Q |
| |
|
||| |
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|
| T |
40945018 |
ttg |
40945020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 188
Target Start/End: Original strand, 40918607 - 40918792
Alignment:
| Q |
11 |
caaagggcttttgacaaggatgtttagcaacaggccttgtgttgaatgcatatgca----gtataatcagctcttct----ataccaattcagaaaagtt |
102 |
Q |
| |
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|||||||||||||||||||||||||||||||| | || |||||||||||||| ||| || |||| || ||| || |||||| || |||| | |
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| T |
40918607 |
caaagggcttttgacaaggatgtttagcaacaaggctagtgttgaatgcataagcaagcagtgtaataagttctacttactataccacttataaaaaaat |
40918706 |
T |
|
| Q |
103 |
cttgatggcatttctagttctctcggtgacaaaactcctctcagaatttgaaccatgaatccccatgaaactgagattgaccaaaa |
188 |
Q |
| |
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|||||||| |||||||||||| ||| ||||||||||| |||||||||||||||||||| || || |||||||||||||||||||| |
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| T |
40918707 |
cttgatggaatttctagttctgtcgaggacaaaactcccctcagaatttgaaccatgaagccgcaagaaactgagattgaccaaaa |
40918792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 22 - 391
Target Start/End: Original strand, 22775581 - 22775950
Alignment:
| Q |
22 |
tgacaaggatgtttagcaacaggccttgtgttgaatgcatatgcagtataatcagctcttctataccaattcagaaaagttcttgatggcatttctagtt |
121 |
Q |
| |
|
|||||||| ||||| | ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||| |||||| |||| | |
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| T |
22775581 |
tgacaagggtgtttggttacaggccttgtgttgaatgcataagcagtgtaatcagctcttctataccaattaagaaaggttcttgttggcatctctaact |
22775680 |
T |
|
| Q |
122 |
ctctcggtgacaaaactcctctcagaatttgaaccatgaatccccatgaaactgagattgaccaaaatctgtttttgtcatagcatattgattgttgcat |
221 |
Q |
| |
|
|||| || ||||| ||||| || |||| |||||| | | ||||||||||||||||| ||||| |||| |||||||||||||| ||||| |||||||| |
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| T |
22775681 |
ctctaggggacaacactcccctaagaacttgaacaacatagccccatgaaactgagatggaccagtatctctttttgtcatagcaaattgactgttgcat |
22775780 |
T |
|
| Q |
222 |
gatgctggatgagtcttggttgatggattccattaaatgttttatggattgtgctcttgacatacttgggaatattggttgtactacatcaaggtgatgt |
321 |
Q |
| |
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||||| ||| ||||| || | |||| |||||| || | || |||||| |||| ||| |||| ||||| ||||| |||||||||||||| || |
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| T |
22775781 |
tatgctacctgaatcttgcttcacagatttcattaagtgctgtagtgattgtactctgttcatctttggaaatatcggttgcactacatcaaggtggtgc |
22775880 |
T |
|
| Q |
322 |
aatgacactagtggagccacagggtgtgcacctagaaggcctaatagatctccatacacatcatactgca |
391 |
Q |
| |
|
|||||||||||||| || ||||| ||||| ||||||||||||||||| || ||||||||||||||||||| |
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| T |
22775881 |
aatgacactagtggggcaacaggatgtgctcctagaaggcctaataggtccccatacacatcatactgca |
22775950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 2621838 - 2621733
Alignment:
| Q |
11 |
caaagggcttttgacaaggatgtttagcaacaggccttgtgttgaatgcatatgcagtataatcagctcttctataccaattcagaaaagttcttgatgg |
110 |
Q |
| |
|
|||| ||||| |||||||| ||| || |||||| | ||||||||| ||||| ||||| ||||||||||||||||||||||| || || || ||||| || |
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| T |
2621838 |
caaaaggcttctgacaagggtgtcgagtaacaggacgtgtgttgaaagcataagcagtgtaatcagctcttctataccaattaaggaatgtccttgaagg |
2621739 |
T |
|
| Q |
111 |
catttc |
116 |
Q |
| |
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|||||| |
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|
| T |
2621738 |
catttc |
2621733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 41316847 - 41316914
Alignment:
| Q |
49 |
gtgttgaatgcatatgcagtataatcagctcttctataccaattcagaaaagttcttgatggcatttc |
116 |
Q |
| |
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|||||||||||||||||||| ||||| |||||||| |||||||||| || |||||||| |||||||| |
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| T |
41316847 |
gtgttgaatgcatatgcagtgtaatctgctcttctgtaccaattcaagaacgttcttgaaggcatttc |
41316914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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