View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15916_low_7 (Length: 708)
Name: NF15916_low_7
Description: NF15916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15916_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 156 - 479
Target Start/End: Original strand, 38625527 - 38625832
Alignment:
| Q |
156 |
aggtgattgtagaaaagtataccaaatgcgatctgcctcatttggagaagaaaaagtaagactataa-tcaaatttgagttagataagtaaatgcataaa |
254 |
Q |
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| T |
38625527 |
aggtgattgtagaaaagtataccaaatgcgatctgcctcatttggagaagaaaaagtaagactataaatcaaatttgagttagataaataaatgc----- |
38625621 |
T |
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| Q |
255 |
actttatgcataagttgtaattatcataacttacttagtaattttatcatttgttatatttttgtgatagatatcttgttccaagagacttgtcagttgg |
354 |
Q |
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| T |
38625622 |
---------ataagttgtaattat----agtaacttagtaattttat-atttgttatatttttgtgatagatatcttgttccaagagacttgtcagttgg |
38625707 |
T |
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| Q |
355 |
gcatttcattcatattttgagttccagacttaatttaccagctggaaaagctctctttgtatttgtcaagaatactttacctcaaactggtaataaactt |
454 |
Q |
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| T |
38625708 |
acatttcattcatattttgagttctagacttaatttaccagctggaaaagctctctttgtatttgtcaagaatactttacctcaaactggtaataaactt |
38625807 |
T |
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| Q |
455 |
gcattatcctaatcttaaatctatc |
479 |
Q |
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| T |
38625808 |
gcattatcctaatcttaaatctatc |
38625832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 534 - 678
Target Start/End: Original strand, 38625910 - 38626054
Alignment:
| Q |
534 |
cagctagtatgatggactctgtttatagatcattcaaggatgaggatggatttctttacctgtattatagcactgagaaaacattcggatactgtacata |
633 |
Q |
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| T |
38625910 |
cagctagtatgatggactctgtttatagatcattcaaggatgaggatggatttctttacctgtattatagcactgagaaaacattcggatactgtacata |
38626009 |
T |
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| Q |
634 |
atgtcaaactattcaataaactctctacacttgtgaagtactact |
678 |
Q |
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| T |
38626010 |
atgtcaaactattcaataaactctctacacttgtgaagtactact |
38626054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 38625387 - 38625456
Alignment:
| Q |
16 |
caaaggcttgaagaatcgcgtgatattattgccaaataccccgatcgaatccccgtaagtcccatcaatc |
85 |
Q |
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| T |
38625387 |
caaaggcttgaagaatcgcgtgatattattgccaaataccccgatcgaatccccgtaagtcccatcaatc |
38625456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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