View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15917_high_8 (Length: 301)
Name: NF15917_high_8
Description: NF15917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15917_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 7 - 284
Target Start/End: Original strand, 5116670 - 5116947
Alignment:
| Q |
7 |
tccaagaaaattctctgttgtagcacaaacacgagccaaaccatcatcgtctaatataattttcagaagtataaatgttgcaacctgtggagatatacaa |
106 |
Q |
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| T |
5116670 |
tccaaaaaaattctctgttgtagcacaaacacgagccaaaccatcatcgtctaatataattttcagaattataaatgttgcaacctgtggagatatacaa |
5116769 |
T |
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| Q |
107 |
ctttcattagcaggtatattggtaacaaaaatggatgtcaaaatattttatactaataaactagcaaaagaataagaatagagaaactaacaatttttgt |
206 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| | |||| |||||||||||||||||||||||||||||| |
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| T |
5116770 |
ctttcattagcaggtatattggtaacaaaaatgaatgtcaaaatactttatactaataaactggaaaaacaataagaatagagaaactaacaatttttgt |
5116869 |
T |
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| Q |
207 |
caattcattgccgttttgcatatttgacaagcatagtgaaattatctcacttgagatatagaaacctatggcttcttt |
284 |
Q |
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| T |
5116870 |
caattcattgccgttttgcatatttgacaagcatagtgaaattatctcacttgagagatagaaacctatggcttcttt |
5116947 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 258
Target Start/End: Complemental strand, 9519133 - 9519047
Alignment:
| Q |
172 |
aaaagaataagaatagagaaactaacaatttttgtcaattcattgccgttttgcatatttgacaagcatagtgaaattatctcactt |
258 |
Q |
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|||| |||||||||||||||||||||| |||| | ||||| |||||| ||| |||||| | | |||||||| ||||||||||||| |
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| T |
9519133 |
aaaacaataagaatagagaaactaacagttttggataattctttgccgatttccatattgcataggcatagtggaattatctcactt |
9519047 |
T |
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